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For example, some code from @tyarkoni: resample_to_img(nb.load(img), template, clip=True, interpolation='linear')
deviates from the defaults interpolation='continuous' and clip=False.
Changing those defaults appears to give the maps being analyzed a more biologically plausible result.
Additional details
NiMARE version: dev
What were you trying to do?
add nimare to the neuroscout paper
What did you expect to happen?
biologically plausible results conformant to previous analyses with PyMare
What actually happened?
weird pixelated results
The text was updated successfully, but these errors were encountered:
jdkent
added
the
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Issues noting problems and PRs fixing those problems.
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Feb 4, 2021
Summary
when preprocessing the input for IBMA, the input images are resampled to match the masker object (through the transform).
nilearn's resampling function default options may not be optimal for meta-analytic maps.
For example, some code from @tyarkoni:
resample_to_img(nb.load(img), template, clip=True, interpolation='linear')
deviates from the defaults
interpolation='continuous'
andclip=False
.Changing those defaults appears to give the maps being analyzed a more biologically plausible result.
Additional details
What were you trying to do?
add nimare to the neuroscout paper
What did you expect to happen?
biologically plausible results conformant to previous analyses with PyMare
What actually happened?
weird pixelated results
The text was updated successfully, but these errors were encountered: