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Name		Name	Last commit message	Last commit date
Latest commit Jon Palmer try to fix readthedocs Nov 18, 2023 15f497c · Nov 18, 2023 History 651 Commits
.github/workflows		.github/workflows	funguild work w/out -o and add release docker build	Nov 26, 2021
amptk		amptk	fix for bug #101 where qCount is None not 0	Oct 18, 2023
docs		docs	try to fix readthedocs	Nov 18, 2023
scripts		scripts	add custom db shortcut option #80 ; add --sintax_db option to tax; mov…	Mar 24, 2021
test_data		test_data	fix bug in taxonomy, unify basenaming, and many py2/py3 fixes	Apr 10, 2018
.gitignore		.gitignore	bug fix for amptk database; fix ITS and PR2 dbs, refine funguild	Nov 26, 2021
.readthedocs.yaml		.readthedocs.yaml	try to fix readthedocs	Nov 18, 2023
Dockerfile		Dockerfile	try two step build	Nov 22, 2021
Dockerfile2		Dockerfile2	bump ITS db to v8.3; add PR2 draft DB, clean up dockerbuild folder	Nov 22, 2021
LICENSE.md		LICENSE.md	updates to v0.3.4	Apr 11, 2016
MANIFEST.in		MANIFEST.in	add dockerfile/workflow and test	Nov 21, 2021
README.md		README.md	Update README.md	Mar 28, 2021
amptk-docker		amptk-docker	bump ITS db to v8.3; add PR2 draft DB, clean up dockerbuild folder	Nov 22, 2021
setup.py		setup.py	bug fix for amptk database; fix ITS and PR2 dbs, refine funguild	Nov 26, 2021

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AMPtk

NGS AMPlicon Tool Kit:

Documentation: http://amptk.readthedocs.io/

Citation

Palmer JM, Jusino MA, Banik MT, Lindner DL. 2018. Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data. PeerJ 6:e4925; DOI 10.7717/peerj.4925.

https://peerj.com/articles/4925/