From ae6be46d9e9a1ac7ce9c8e0e82543f2e52c48414 Mon Sep 17 00:00:00 2001
From: "Anna (Anya) Parker" <50943381+anna-parker@users.noreply.github.com>
Date: Tue, 11 Feb 2025 11:30:05 +0100
Subject: [PATCH] update tests

---
 tests/functional/tree/cram/iqtree-offending-characters.t      | 4 ++--
 tests/functional/tree/data/aligned_offending_characters.fasta | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/tests/functional/tree/cram/iqtree-offending-characters.t b/tests/functional/tree/cram/iqtree-offending-characters.t
index 46a9c8e2c..f9f5e9535 100644
--- a/tests/functional/tree/cram/iqtree-offending-characters.t
+++ b/tests/functional/tree/cram/iqtree-offending-characters.t
@@ -11,8 +11,8 @@ Build a tree with offending characters, and ensure characters are not overwritte
   >  --nthreads 1 | head -n 1
   WARNING: Potentially offending character "'" detected in taxon name "KX369547.1/Cote_d'Ivore".  We recommend replacing offending characters with '_' in the alignment file to avoid issues downstream.
 
-  $ cat "tree_raw.nwk" | grep -q "Cote_d'Ivore" && echo "Substring found"
+  $ cat "tree_raw.nwk" | grep -q "'KX369547.1/Cote_d''Ivore'" && echo "Substring found"
   Substring found
 
-  $ cat "tree_raw.nwk" | grep -q "United-Arab-Emirates" && echo "Substring found"
+  $ cat "tree_raw.nwk" | grep -q "1_0181_PF/@United-Arab-Emirates" && echo "Substring found"
   Substring found
\ No newline at end of file
diff --git a/tests/functional/tree/data/aligned_offending_characters.fasta b/tests/functional/tree/data/aligned_offending_characters.fasta
index e00719097..b12f4823b 100644
--- a/tests/functional/tree/data/aligned_offending_characters.fasta
+++ b/tests/functional/tree/data/aligned_offending_characters.fasta
@@ -360,7 +360,7 @@ GATGGGAAAAGAAGGTGGCGACCTTCCCCACCCTTCAATCTGGGGCCTGAACTGGAGATC
 AGCTGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
 NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
->1_0181_PF/United-Arab-Emirates
+>1_0181_PF/@United-Arab-Emirates
 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTATCAACAGGTTTT
 ATTTGGATTTGGAAACGAGAGTTTCTGGTCATGAAAAACCCAAAAAAGAAATCCGGAGGA
 TTCCGGATTGTCAATATGCTAAAACGCGGAGTAGCCCGTGTGAGCCCCTTTGGGGGCTTG