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Merge pull request #261 from nextstrain/sc2-2025-01
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Update SC2 datasets
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@corneliusroemer
corneliusroemer authored Jan 28, 2025
2 parents baf8bde + d27cfd6 commit f1b58a7
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89 changes: 89 additions & 0 deletions data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md
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## Unreleased

- Add newly designated Nextstrain clade 25A (LP.8.1)
- Add all 78 Pango lineages newly designated between 2024-11-14 and 2025-01-27. Unfold below to see a list of all newly included lineages with their designation dates:

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>

- XEK.1 (2024-12-10)
- XEK.1.1 (2024-12-10)
- XEK.2 (2024-12-10)
- XEK.3 (2024-12-10)
- XEQ (2024-12-10)
- LP.11 (2024-12-10)
- LP.8.2.1 (2024-12-10)
- LP.8.1.1 (2024-12-10)
- XEC.8 (2024-12-10)
- XEC.9 (2024-12-10)
- XEC.10 (2024-12-10)
- XEC.11 (2024-12-10)
- XEC.2.1 (2024-12-10)
- XEC.2.2 (2024-12-10)
- XEC.2.3 (2024-12-10)
- XEC.2.3.1 (2024-12-10)
- XEC.12 (2024-12-10)
- LF.7.3.1 (2024-12-10)
- MV.1.1 (2024-12-10)
- MU.2.1.1 (2024-12-10)
- MU.1.1 (2024-12-10)
- MU.4 (2024-12-10)
- MU.5 (2024-12-10)
- MC.23 (2024-12-10)
- XEC.13 (2024-12-11)
- MC.24 (2024-12-11)
- MC.25 (2024-12-11)
- MC.26 (2024-12-11)
- MC.26.1 (2024-12-11)
- MC.27 (2024-12-11)
- MC.28 (2024-12-11)
- MC.28.1 (2024-12-11)
- MC.1.2 (2024-12-11)
- XEC.14 (2024-12-11)
- MC.13.3 (2024-12-11)
- LB.1.3.4 (2024-12-11)
- LP.10.1.1 (2024-12-18)
- KP.2.3.14 (2024-12-18)
- JN.1.68.1 (2024-12-18)
- LP.8.1.2 (2024-12-18)
- KP.3.1.11 (2024-12-18)
- KP.3.1.12 (2024-12-18)
- NR.1 (2024-12-18)
- NS.1 (2024-12-18)
- NS.1.1 (2024-12-18)
- NS.1.2 (2024-12-18)
- NS.2 (2024-12-18)
- MT.1.1 (2024-12-18)
- NF.1.1 (2024-12-18)
- NS.3 (2024-12-18)
- ND.2.1 (2024-12-18)
- ND.1.1.1 (2024-12-18)
- ND.1.1.2 (2024-12-18)
- XEJ.1 (2024-12-18)
- XEJ.2 (2024-12-18)
- XEJ.3 (2024-12-18)
- XEK.4 (2024-12-18)
- NT.1 (2024-12-18)
- LF.7.5 (2024-12-18)
- XEC.15 (2024-12-18)
- KS.2 (2024-12-18)
- XER (2024-12-18)
- XEC.16 (2024-12-18)
- NU.1 (2024-12-18)
- XES (2024-12-18)
- MC.1.3 (2024-12-18)
- MC.1.3.1 (2024-12-18)
- KP.2.3.15 (2024-12-18)
- KP.2.6.2 (2024-12-18)
- KP.2.6.3 (2024-12-18)
- NB.1.1 (2024-12-18)
- LF.7.6 (2024-12-18)
- LF.7.6.1 (2024-12-18)
- MC.19.1 (2024-12-19)
- KP.3.3.5 (2024-12-20)
- NV.1 (2024-12-20)
- XET (2024-12-20)
- XEU (2024-12-20)

</details>

## 2024-11-19T14:18:53Z

Fix duplicate changelog entry, nothing else changed.
Expand Down
2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/BA.2.86/tree.json
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Large diffs are not rendered by default.

89 changes: 89 additions & 0 deletions data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,3 +1,92 @@
## Unreleased

- Add newly designated Nextstrain clade 25A (LP.8.1)
- Add all 78 Pango lineages newly designated between 2024-11-14 and 2025-01-27. Unfold below to see a list of all newly included lineages with their designation dates:

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>

- XEK.1 (2024-12-10)
- XEK.1.1 (2024-12-10)
- XEK.2 (2024-12-10)
- XEK.3 (2024-12-10)
- XEQ (2024-12-10)
- LP.11 (2024-12-10)
- LP.8.2.1 (2024-12-10)
- LP.8.1.1 (2024-12-10)
- XEC.8 (2024-12-10)
- XEC.9 (2024-12-10)
- XEC.10 (2024-12-10)
- XEC.11 (2024-12-10)
- XEC.2.1 (2024-12-10)
- XEC.2.2 (2024-12-10)
- XEC.2.3 (2024-12-10)
- XEC.2.3.1 (2024-12-10)
- XEC.12 (2024-12-10)
- LF.7.3.1 (2024-12-10)
- MV.1.1 (2024-12-10)
- MU.2.1.1 (2024-12-10)
- MU.1.1 (2024-12-10)
- MU.4 (2024-12-10)
- MU.5 (2024-12-10)
- MC.23 (2024-12-10)
- XEC.13 (2024-12-11)
- MC.24 (2024-12-11)
- MC.25 (2024-12-11)
- MC.26 (2024-12-11)
- MC.26.1 (2024-12-11)
- MC.27 (2024-12-11)
- MC.28 (2024-12-11)
- MC.28.1 (2024-12-11)
- MC.1.2 (2024-12-11)
- XEC.14 (2024-12-11)
- MC.13.3 (2024-12-11)
- LB.1.3.4 (2024-12-11)
- LP.10.1.1 (2024-12-18)
- KP.2.3.14 (2024-12-18)
- JN.1.68.1 (2024-12-18)
- LP.8.1.2 (2024-12-18)
- KP.3.1.11 (2024-12-18)
- KP.3.1.12 (2024-12-18)
- NR.1 (2024-12-18)
- NS.1 (2024-12-18)
- NS.1.1 (2024-12-18)
- NS.1.2 (2024-12-18)
- NS.2 (2024-12-18)
- MT.1.1 (2024-12-18)
- NF.1.1 (2024-12-18)
- NS.3 (2024-12-18)
- ND.2.1 (2024-12-18)
- ND.1.1.1 (2024-12-18)
- ND.1.1.2 (2024-12-18)
- XEJ.1 (2024-12-18)
- XEJ.2 (2024-12-18)
- XEJ.3 (2024-12-18)
- XEK.4 (2024-12-18)
- NT.1 (2024-12-18)
- LF.7.5 (2024-12-18)
- XEC.15 (2024-12-18)
- KS.2 (2024-12-18)
- XER (2024-12-18)
- XEC.16 (2024-12-18)
- NU.1 (2024-12-18)
- XES (2024-12-18)
- MC.1.3 (2024-12-18)
- MC.1.3.1 (2024-12-18)
- KP.2.3.15 (2024-12-18)
- KP.2.6.2 (2024-12-18)
- KP.2.6.3 (2024-12-18)
- NB.1.1 (2024-12-18)
- LF.7.6 (2024-12-18)
- LF.7.6.1 (2024-12-18)
- MC.19.1 (2024-12-19)
- KP.3.3.5 (2024-12-20)
- NV.1 (2024-12-20)
- XET (2024-12-20)
- XEU (2024-12-20)

</details>

## 2024-11-19T14:18:53Z

Fix duplicate changelog entry, nothing else changed.
Expand Down
2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/BA.2/tree.json
View file

Large diffs are not rendered by default.

89 changes: 89 additions & 0 deletions data/nextstrain/sars-cov-2/XBB/CHANGELOG.md
View file
Original file line number Diff line number Diff line change
@@ -1,3 +1,92 @@
## Unreleased

- Add newly designated Nextstrain clade 25A (LP.8.1)
- Add all 78 Pango lineages newly designated between 2024-11-14 and 2025-01-27. Unfold below to see a list of all newly included lineages with their designation dates:

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>

- XEK.1 (2024-12-10)
- XEK.1.1 (2024-12-10)
- XEK.2 (2024-12-10)
- XEK.3 (2024-12-10)
- XEQ (2024-12-10)
- LP.11 (2024-12-10)
- LP.8.2.1 (2024-12-10)
- LP.8.1.1 (2024-12-10)
- XEC.8 (2024-12-10)
- XEC.9 (2024-12-10)
- XEC.10 (2024-12-10)
- XEC.11 (2024-12-10)
- XEC.2.1 (2024-12-10)
- XEC.2.2 (2024-12-10)
- XEC.2.3 (2024-12-10)
- XEC.2.3.1 (2024-12-10)
- XEC.12 (2024-12-10)
- LF.7.3.1 (2024-12-10)
- MV.1.1 (2024-12-10)
- MU.2.1.1 (2024-12-10)
- MU.1.1 (2024-12-10)
- MU.4 (2024-12-10)
- MU.5 (2024-12-10)
- MC.23 (2024-12-10)
- XEC.13 (2024-12-11)
- MC.24 (2024-12-11)
- MC.25 (2024-12-11)
- MC.26 (2024-12-11)
- MC.26.1 (2024-12-11)
- MC.27 (2024-12-11)
- MC.28 (2024-12-11)
- MC.28.1 (2024-12-11)
- MC.1.2 (2024-12-11)
- XEC.14 (2024-12-11)
- MC.13.3 (2024-12-11)
- LB.1.3.4 (2024-12-11)
- LP.10.1.1 (2024-12-18)
- KP.2.3.14 (2024-12-18)
- JN.1.68.1 (2024-12-18)
- LP.8.1.2 (2024-12-18)
- KP.3.1.11 (2024-12-18)
- KP.3.1.12 (2024-12-18)
- NR.1 (2024-12-18)
- NS.1 (2024-12-18)
- NS.1.1 (2024-12-18)
- NS.1.2 (2024-12-18)
- NS.2 (2024-12-18)
- MT.1.1 (2024-12-18)
- NF.1.1 (2024-12-18)
- NS.3 (2024-12-18)
- ND.2.1 (2024-12-18)
- ND.1.1.1 (2024-12-18)
- ND.1.1.2 (2024-12-18)
- XEJ.1 (2024-12-18)
- XEJ.2 (2024-12-18)
- XEJ.3 (2024-12-18)
- XEK.4 (2024-12-18)
- NT.1 (2024-12-18)
- LF.7.5 (2024-12-18)
- XEC.15 (2024-12-18)
- KS.2 (2024-12-18)
- XER (2024-12-18)
- XEC.16 (2024-12-18)
- NU.1 (2024-12-18)
- XES (2024-12-18)
- MC.1.3 (2024-12-18)
- MC.1.3.1 (2024-12-18)
- KP.2.3.15 (2024-12-18)
- KP.2.6.2 (2024-12-18)
- KP.2.6.3 (2024-12-18)
- NB.1.1 (2024-12-18)
- LF.7.6 (2024-12-18)
- LF.7.6.1 (2024-12-18)
- MC.19.1 (2024-12-19)
- KP.3.3.5 (2024-12-20)
- NV.1 (2024-12-20)
- XET (2024-12-20)
- XEU (2024-12-20)

</details>

## 2024-11-19T14:18:53Z

Fix duplicate changelog entry, nothing else changed.
Expand Down
2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/XBB/tree.json
View file

Large diffs are not rendered by default.

89 changes: 89 additions & 0 deletions data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md
View file
Original file line number Diff line number Diff line change
@@ -1,3 +1,92 @@
## Unreleased

- Add newly designated Nextstrain clade 25A (LP.8.1)
- Add all 78 Pango lineages newly designated between 2024-11-14 and 2025-01-27. Unfold below to see a list of all newly included lineages with their designation dates:

<details>
<summary> Newly included lineages, with designation date in parentheses</summary>

- XEK.1 (2024-12-10)
- XEK.1.1 (2024-12-10)
- XEK.2 (2024-12-10)
- XEK.3 (2024-12-10)
- XEQ (2024-12-10)
- LP.11 (2024-12-10)
- LP.8.2.1 (2024-12-10)
- LP.8.1.1 (2024-12-10)
- XEC.8 (2024-12-10)
- XEC.9 (2024-12-10)
- XEC.10 (2024-12-10)
- XEC.11 (2024-12-10)
- XEC.2.1 (2024-12-10)
- XEC.2.2 (2024-12-10)
- XEC.2.3 (2024-12-10)
- XEC.2.3.1 (2024-12-10)
- XEC.12 (2024-12-10)
- LF.7.3.1 (2024-12-10)
- MV.1.1 (2024-12-10)
- MU.2.1.1 (2024-12-10)
- MU.1.1 (2024-12-10)
- MU.4 (2024-12-10)
- MU.5 (2024-12-10)
- MC.23 (2024-12-10)
- XEC.13 (2024-12-11)
- MC.24 (2024-12-11)
- MC.25 (2024-12-11)
- MC.26 (2024-12-11)
- MC.26.1 (2024-12-11)
- MC.27 (2024-12-11)
- MC.28 (2024-12-11)
- MC.28.1 (2024-12-11)
- MC.1.2 (2024-12-11)
- XEC.14 (2024-12-11)
- MC.13.3 (2024-12-11)
- LB.1.3.4 (2024-12-11)
- LP.10.1.1 (2024-12-18)
- KP.2.3.14 (2024-12-18)
- JN.1.68.1 (2024-12-18)
- LP.8.1.2 (2024-12-18)
- KP.3.1.11 (2024-12-18)
- KP.3.1.12 (2024-12-18)
- NR.1 (2024-12-18)
- NS.1 (2024-12-18)
- NS.1.1 (2024-12-18)
- NS.1.2 (2024-12-18)
- NS.2 (2024-12-18)
- MT.1.1 (2024-12-18)
- NF.1.1 (2024-12-18)
- NS.3 (2024-12-18)
- ND.2.1 (2024-12-18)
- ND.1.1.1 (2024-12-18)
- ND.1.1.2 (2024-12-18)
- XEJ.1 (2024-12-18)
- XEJ.2 (2024-12-18)
- XEJ.3 (2024-12-18)
- XEK.4 (2024-12-18)
- NT.1 (2024-12-18)
- LF.7.5 (2024-12-18)
- XEC.15 (2024-12-18)
- KS.2 (2024-12-18)
- XER (2024-12-18)
- XEC.16 (2024-12-18)
- NU.1 (2024-12-18)
- XES (2024-12-18)
- MC.1.3 (2024-12-18)
- MC.1.3.1 (2024-12-18)
- KP.2.3.15 (2024-12-18)
- KP.2.6.2 (2024-12-18)
- KP.2.6.3 (2024-12-18)
- NB.1.1 (2024-12-18)
- LF.7.6 (2024-12-18)
- LF.7.6.1 (2024-12-18)
- MC.19.1 (2024-12-19)
- KP.3.3.5 (2024-12-20)
- NV.1 (2024-12-20)
- XET (2024-12-20)
- XEU (2024-12-20)

</details>

## 2024-11-19T14:18:53Z

Fix duplicate changelog entry, nothing else changed.
Expand Down
2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/tree.json
View file

Large diffs are not rendered by default.

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