diff --git a/CHANGELOG.md b/CHANGELOG.md
index 146b93b6..20dd21f8 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -18,6 +18,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
 ### Enhancements & fixes
 
 - [#166](https://github.com/nf-core/fetchngs/issues/175) - Add NF-TEST pipeline end-to-end tests for existing CI tests
+- [#184](https://github.com/nf-core/fetchngs/pull/184/files) Emits all files in workflow for testing and enabling workflow to be imported (not supported by Nextflow)
 
 ## [[1.10.0](https://github.com/nf-core/fetchngs/releases/tag/1.10.0)] - 2023-05-16
 
diff --git a/modules/local/sra_to_samplesheet/tests/main.nf.test.snap b/modules/local/sra_to_samplesheet/tests/main.nf.test.snap
index 8b5f4947..e60c646a 100644
--- a/modules/local/sra_to_samplesheet/tests/main.nf.test.snap
+++ b/modules/local/sra_to_samplesheet/tests/main.nf.test.snap
@@ -19,8 +19,8 @@
                             "sample_description": "RNA-Seq reads mapped onto L. Boulardi Toti-like virus genome",
                             "fastq_md5": "8d7d7b854d0207d1226477a30103fade;9fd57225d6c07a31843276d6df9b15c0;5a62e8f785687dce890cfb4fe3e607f9",
                             "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_2.fastq.gz",
-                            "fastq_1": "ERX1188904_ERR1109373_1.fastq.gz:md5,9fd57225d6c07a31843276d6df9b15c0",
-                            "fastq_2": "ERX1188904_ERR1109373_2.fastq.gz:md5,5a62e8f785687dce890cfb4fe3e607f9",
+                            "fastq_1": "./results/fastq/ERX1188904_ERR1109373_1.fastq.gz",
+                            "fastq_2": "./results/fastq/ERX1188904_ERR1109373_2.fastq.gz",
                             "md5_1": "9fd57225d6c07a31843276d6df9b15c0",
                             "md5_2": "5a62e8f785687dce890cfb4fe3e607f9",
                             "single_end": false
@@ -45,8 +45,8 @@
                             "sample_description": "RNA-Seq reads mapped onto L. Boulardi Toti-like virus genome",
                             "fastq_md5": "8d7d7b854d0207d1226477a30103fade;9fd57225d6c07a31843276d6df9b15c0;5a62e8f785687dce890cfb4fe3e607f9",
                             "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_2.fastq.gz",
-                            "fastq_1": "ERX1188904_ERR1109373_1.fastq.gz:md5,9fd57225d6c07a31843276d6df9b15c0",
-                            "fastq_2": "ERX1188904_ERR1109373_2.fastq.gz:md5,5a62e8f785687dce890cfb4fe3e607f9",
+                            "fastq_1": "./results/fastq/ERX1188904_ERR1109373_1.fastq.gz",
+                            "fastq_2": "./results/fastq/ERX1188904_ERR1109373_2.fastq.gz",
                             "md5_1": "9fd57225d6c07a31843276d6df9b15c0",
                             "md5_2": "5a62e8f785687dce890cfb4fe3e607f9",
                             "single_end": false
@@ -71,8 +71,8 @@
                             "sample_description": "RNA-Seq reads mapped onto L. Boulardi Toti-like virus genome",
                             "fastq_md5": "8d7d7b854d0207d1226477a30103fade;9fd57225d6c07a31843276d6df9b15c0;5a62e8f785687dce890cfb4fe3e607f9",
                             "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_2.fastq.gz",
-                            "fastq_1": "ERX1188904_ERR1109373_1.fastq.gz:md5,9fd57225d6c07a31843276d6df9b15c0",
-                            "fastq_2": "ERX1188904_ERR1109373_2.fastq.gz:md5,5a62e8f785687dce890cfb4fe3e607f9",
+                            "fastq_1": "./results/fastq/ERX1188904_ERR1109373_1.fastq.gz",
+                            "fastq_2": "./results/fastq/ERX1188904_ERR1109373_2.fastq.gz",
                             "md5_1": "9fd57225d6c07a31843276d6df9b15c0",
                             "md5_2": "5a62e8f785687dce890cfb4fe3e607f9",
                             "single_end": false
@@ -97,8 +97,8 @@
                             "sample_description": "RNA-Seq reads mapped onto L. Boulardi Toti-like virus genome",
                             "fastq_md5": "8d7d7b854d0207d1226477a30103fade;9fd57225d6c07a31843276d6df9b15c0;5a62e8f785687dce890cfb4fe3e607f9",
                             "fastq_ftp": "ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_2.fastq.gz",
-                            "fastq_1": "ERX1188904_ERR1109373_1.fastq.gz:md5,9fd57225d6c07a31843276d6df9b15c0",
-                            "fastq_2": "ERX1188904_ERR1109373_2.fastq.gz:md5,5a62e8f785687dce890cfb4fe3e607f9",
+                            "fastq_1": "./results/fastq/ERX1188904_ERR1109373_1.fastq.gz",
+                            "fastq_2": "./results/fastq/ERX1188904_ERR1109373_2.fastq.gz",
                             "md5_1": "9fd57225d6c07a31843276d6df9b15c0",
                             "md5_2": "5a62e8f785687dce890cfb4fe3e607f9",
                             "single_end": false
@@ -108,6 +108,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-08-17T10:55:52+0000"
+        "timestamp": "2023-08-23T09:38:15+0000"
     }
 }
\ No newline at end of file
diff --git a/workflows/sra/main.nf b/workflows/sra/main.nf
index 512a73d4..e60386f9 100644
--- a/workflows/sra/main.nf
+++ b/workflows/sra/main.nf
@@ -81,6 +81,8 @@ workflow SRA {
         .set { ch_sra_metadata }
     ch_versions = ch_versions.mix(SRA_RUNINFO_TO_FTP.out.versions.first())
 
+    fastq_files = Channel.empty()
+
     if (!params.skip_fastq_download) {
 
         ch_sra_metadata
@@ -111,10 +113,13 @@ workflow SRA {
         )
         ch_versions = ch_versions.mix(FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS.out.versions.first())
 
-        SRA_FASTQ_FTP
-            .out
-            .fastq
-            .mix(FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS.out.reads)
+        // Isolate FASTQ channel which will be added to emit block
+        fastq_files = fastq_files.mix(
+            SRA_FASTQ_FTP.out.fastq,
+            FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS.out.reads
+        )
+
+        fastq_files
             .map { 
                 meta, fastq ->
                     def reads = fastq instanceof List ? fastq.flatten() : [ fastq ]
@@ -161,6 +166,13 @@ workflow SRA {
     CUSTOM_DUMPSOFTWAREVERSIONS (
         ch_versions.unique().collectFile(name: 'collated_versions.yml')
     )
+
+    emit:
+        fastq         = fastq_files
+        samplesheet   = SRA_MERGE_SAMPLESHEET.out.samplesheet
+        mapping       = SRA_MERGE_SAMPLESHEET.out.mappings
+        multiqc_config = MULTIQC_MAPPINGS_CONFIG.out.yml
+        versions      = ch_versions.unique()
 }
 
 /*
diff --git a/workflows/synapse/main.nf b/workflows/synapse/main.nf
index f8cbeba1..0753a521 100644
--- a/workflows/synapse/main.nf
+++ b/workflows/synapse/main.nf
@@ -133,6 +133,11 @@ workflow SYNAPSE {
     CUSTOM_DUMPSOFTWAREVERSIONS (
         ch_versions.unique().collectFile(name: 'collated_versions.yml')
     )
+
+    emit:
+        fastq       = ch_fastq
+        samplesheet = SYNAPSE_MERGE_SAMPLESHEET.out.samplesheet
+        versions    = ch_versions.unique()
 }
 
 /*
diff --git a/workflows/synapse/tests/main.nf.test.snap b/workflows/synapse/tests/main.nf.test.snap
new file mode 100644
index 00000000..8528f776
--- /dev/null
+++ b/workflows/synapse/tests/main.nf.test.snap
@@ -0,0 +1,16 @@
+{
+    "samplesheet": {
+        "content": [
+            "id_mappings.csv:md5,3e287081f1e9349921fa8c709a874565",
+            "multiqc_config.yml:md5,a97047e12b0ea3f46d285629e4053548",
+            "samplesheet.csv:md5,9b3c35e8af74e9af194baa2498aaf4d4"
+        ],
+        "timestamp": "2023-08-24T14:05:07+0000"
+    },
+    "software_versions": {
+        "content": [
+            "software_versions.yml:md5,f37983a6b1ce2334fe62fa188b31ca51"
+        ],
+        "timestamp": "2023-08-24T14:05:07+0000"
+    }
+}
\ No newline at end of file