diff --git a/CHANGELOG.md b/CHANGELOG.md index c354cd3f..72db7563 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -22,6 +22,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements - [PR #242](https://github.com/nf-core/fetchngs/pull/242) - Template update for nf-core/tools v2.11 - [PR #243](https://github.com/nf-core/fetchngs/pull/243) - Fixes for [PR #238](https://github.com/nf-core/fetchngs/pull/238) - [PR #246](https://github.com/nf-core/fetchngs/pull/246) - Handle dark/light mode for logo in GitHub README properly +- [PR #248](https://github.com/nf-core/fetchngs/pull/248) - Update pipeline level test data path to use mirror on s3 ### Software dependencies diff --git a/modules/local/multiqc_mappings_config/tests/main.nf.test b/modules/local/multiqc_mappings_config/tests/main.nf.test index c49cedd7..c1b2c5df 100644 --- a/modules/local/multiqc_mappings_config/tests/main.nf.test +++ b/modules/local/multiqc_mappings_config/tests/main.nf.test @@ -16,7 +16,7 @@ nextflow_process { process { """ - input[0] = file(params.pipelines_test_data_base + '/modules/local/multiqc_mappings_config/SRX9626017_SRR13191702.mappings.csv', checkIfExists: true) + input[0] = file(params.pipelines_test_data_base + 'modules/local/multiqc_mappings_config/SRX9626017_SRR13191702.mappings.csv', checkIfExists: true) """ } } diff --git a/modules/local/sra_runinfo_to_ftp/tests/main.nf.test b/modules/local/sra_runinfo_to_ftp/tests/main.nf.test index 4dbe2570..31224dab 100644 --- a/modules/local/sra_runinfo_to_ftp/tests/main.nf.test +++ b/modules/local/sra_runinfo_to_ftp/tests/main.nf.test @@ -16,7 +16,7 @@ nextflow_process { process { """ - input[0] = file(params.pipelines_test_data_base + '/modules/local/sra_runinfo_to_ftp/SRR13191702.runinfo.tsv', checkIfExists: true) + input[0] = file(params.pipelines_test_data_base + 'modules/local/sra_runinfo_to_ftp/SRR13191702.runinfo.tsv', checkIfExists: true) """ } } diff --git a/tests/nextflow.config b/tests/nextflow.config index 4533e874..9a7db8d2 100644 --- a/tests/nextflow.config +++ b/tests/nextflow.config @@ -3,7 +3,7 @@ params { modules_test_data_base = 'https://raw.githubusercontent.com/nf-core/test-datasets/3e79d4b5fbed8c6ef7546d50696b343ab9a95fbe/' // Base directory for pipeline test data - pipelines_test_data_base = 'https://raw.githubusercontent.com/nf-core/test-datasets/2732b911c57e607fa7aea5ba0c3d91b25bafb662/' + pipelines_test_data_base = 's3://ngi-igenomes/testdata/nf-core/pipelines/fetchngs/1.15.0/' } // Impose sensible resource limits for testing @@ -24,4 +24,4 @@ manifest { timeline { enabled = false } report { enabled = false } trace { enabled = false } -dag { enabled = false } \ No newline at end of file +dag { enabled = false }