schema_input.json

{
    "$schema": "http://json-schema.org/draft-07/schema",
    "$id": "https://raw.githubusercontent.com/nf-core/funcscan/master/assets/schema_input.json",
    "title": "nf-core/funcscan pipeline - params.input schema",
    "description": "Schema for the file provided with params.input",
    "type": "array",
    "items": {
        "type": "object",
        "properties": {
            "sample": {
                "type": "string",
                "pattern": "^\\S+$",
                "errorMessage": "Sample name must be provided and cannot contain spaces",
                "meta": ["id"],
                "unique": true
            },
            "fasta": {
                "type": "string",
                "format": "file-path",
                "exists": true,
                "pattern": "^\\S+\\.f(ast|n)?a\\.gz$",
                "errorMessage": "Fasta file for reads must be provided, cannot contain spaces and must have extension '.fa.gz', '.fna.gz' or '.fasta.gz'",
                "unique": true
            }
        },
        "required": ["sample", "fasta"]
    }
}