test_bgc_pyrodigal.config

/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Nextflow config file for running minimal tests
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Defines input files and everything required to run a fast and simple pipeline test.

    Use as follows:
        nextflow run nf-core/funcscan -profile test_bgc_pyrodigal,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

process {
    resourceLimits = [
        cpus: 4,
        memory: '15.GB',
        time: '1.h'
    ]
}

params {
    config_profile_name        = 'BGC Pyrodigal test profile'
    config_profile_description = 'Minimal test dataset to check BGC workflow function'

    // Input data
    input                      = params.pipelines_testdata_base_path + 'funcscan/samplesheet_reduced.csv'

    annotation_tool            = 'pyrodigal'

    run_arg_screening          = false
    run_amp_screening          = false
    run_bgc_screening          = true

    bgc_run_hmmsearch          = true
    bgc_hmmsearch_models       = 'https://raw.githubusercontent.com/antismash/antismash/fd61de057e082fbf071732ac64b8b2e8883de32f/antismash/detection/hmm_detection/data/ToyB.hmm'
}