diff --git a/CHANGELOG.md b/CHANGELOG.md
index b1fd07b7..a27c12d3 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,12 +7,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Added`
 
-- [#421](https://github.com/nf-core/funcscan/pull/421) Updated to nf-core template 3.0.2 (by @jfy133)
+- [#421](https://github.com/nf-core/funcscan/pull/421) Updated to nf-core template 3.0.2. (by @jfy133)
 - [#427](https://github.com/nf-core/funcscan/pull/427) AMPcombi now can use multiple other databases for classifications. (by @darcy220606)
+- [#429](https://github.com/nf-core/funcscan/pull/429) Updated to nf-core template 3.1.0. (by @jfy133 and @jasmezz)
 
 ### `Fixed`
 
 - [#427](https://github.com/nf-core/funcscan/pull/427) Fixed the AMP reference database issues reported by users, due to non-ASCII characters. (by @darcy220606)
+- [#430](https://github.com/nf-core/funcscan/pull/430) Updated `rgi/main` module to fix incorrect variable name. (by @amizeranschi and @jasmezz)
 
 ### `Dependencies`
 
diff --git a/modules.json b/modules.json
index 3f236d08..bd233dd2 100644
--- a/modules.json
+++ b/modules.json
@@ -192,7 +192,7 @@
                     },
                     "rgi/main": {
                         "branch": "master",
-                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
+                        "git_sha": "41623bcb962bd02d1a45ad81c1853547ebd26f5f",
                         "installed_by": ["modules"]
                     },
                     "seqkit/seq": {
diff --git a/modules/nf-core/rgi/main/main.nf b/modules/nf-core/rgi/main/main.nf
index ba05358a..287875fa 100644
--- a/modules/nf-core/rgi/main/main.nf
+++ b/modules/nf-core/rgi/main/main.nf
@@ -25,7 +25,7 @@ process RGI_MAIN {
 
     script:
     def args = task.ext.args ?: '' // This customizes the command: rgi load
-    def args2 = task.ext.args ?: '' // This customizes the command: rgi main
+    def args2 = task.ext.args2 ?: '' // This customizes the command: rgi main
     def prefix = task.ext.prefix ?: "${meta.id}"
     def load_wildcard = ""
 
diff --git a/modules/nf-core/rgi/main/tests/main.nf.test.snap b/modules/nf-core/rgi/main/tests/main.nf.test.snap
index a8dc1d61..35b4f7cf 100644
--- a/modules/nf-core/rgi/main/tests/main.nf.test.snap
+++ b/modules/nf-core/rgi/main/tests/main.nf.test.snap
@@ -81,15 +81,15 @@
             }
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-02-19T22:51:36.047807514"
+        "timestamp": "2024-12-10T13:33:59.209306934"
     },
     "rgi/main - haemophilus_influenzae - genome_fna_gz": {
         "content": [
             [
-                "versions.yml:md5,a9f89e3bebd538efa07bcbe9fe1ba37a"
+                "versions.yml:md5,306dec3569e66a74bff07184f2f801ec"
             ],
             [
                 [
@@ -131,13 +131,13 @@
                 "6.0.3"
             ],
             [
-                "3.2.9"
+                "3.3.0"
             ]
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-02-19T22:51:14.372178941"
+        "timestamp": "2024-12-10T13:33:40.479165988"
     }
 }
\ No newline at end of file
diff --git a/tests/test_preannotated.nf.test.snap b/tests/test_preannotated.nf.test.snap
index 7f957b19..e1acd0ba 100644
--- a/tests/test_preannotated.nf.test.snap
+++ b/tests/test_preannotated.nf.test.snap
@@ -143,9 +143,9 @@
     },
     "rgi": {
         "content": [
-            "sample_1.txt:md5,dde77ae2dc240ee4717d8d33a92dfb66",
-            "sample_2.txt:md5,0e652d35ef6e9272aa194b55db609e75",
-            "sample_3.txt:md5,dde77ae2dc240ee4717d8d33a92dfb66"
+            "sample_1.txt:md5,ff8f179d06d8566d8cf779fc7d1f4955",
+            "sample_2.txt:md5,cc4ae1fb9e0d5f79ef5105d640c7b748",
+            "sample_3.txt:md5,ff8f179d06d8566d8cf779fc7d1f4955"
         ],
         "meta": {
             "nf-test": "0.9.0",