From 9357d92155707973a432bb46b6d1a5219427f2be Mon Sep 17 00:00:00 2001 From: jasmezz Date: Mon, 8 May 2023 13:44:17 +0200 Subject: [PATCH 1/4] Fix prokka path --- conf/modules.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/conf/modules.config b/conf/modules.config index a63789a2..76042d55 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -62,7 +62,7 @@ process { withName: PROKKA { publishDir = [ - path: { "${params.outdir}/annotation/prokka/}" }, + path: { "${params.outdir}/annotation/prokka/" }, mode: params.publish_dir_mode, enabled: params.save_annotations, saveAs: { filename -> filename.equals('versions.yml') ? null : filename } From 49d89f733840a7a295e27887ec4819b35f743457 Mon Sep 17 00:00:00 2001 From: jasmezz Date: Mon, 8 May 2023 13:50:58 +0200 Subject: [PATCH 2/4] Update changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index bd180569..c608d594 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#270](https://github.com/nf-core/funcscan/pull/270) Merged pipeline template of nf-core/tools version 2.8 and updated modules accordingly. (by @jasmezz, @jfy133) ### `Fixed` +- [#272](https://github.com/nf-core/funcscan/pull/272) Fix typo in Prokka output path in modules.config. (by @jasmezz) ### `Dependencies` From 71798237118ea418e6199b78a6ccb9f77b227c61 Mon Sep 17 00:00:00 2001 From: jasmezz Date: Mon, 8 May 2023 14:03:26 +0200 Subject: [PATCH 3/4] Fix linting --- CHANGELOG.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index c608d594..291aa939 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,9 +6,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## v1.1.1dev - [unreleased] ### `Added` + - [#270](https://github.com/nf-core/funcscan/pull/270) Merged pipeline template of nf-core/tools version 2.8 and updated modules accordingly. (by @jasmezz, @jfy133) ### `Fixed` + - [#272](https://github.com/nf-core/funcscan/pull/272) Fix typo in Prokka output path in modules.config. (by @jasmezz) ### `Dependencies` @@ -79,4 +81,4 @@ Initial release of nf-core/funcscan, created with the [nf-core](https://nf-co.re ### `Dependencies` -### `Deprecated` +### `Deprecated` \ No newline at end of file From cd9c3ed50adc8145cf2fadf03eb8efd611b3233f Mon Sep 17 00:00:00 2001 From: jasmezz Date: Mon, 8 May 2023 14:06:02 +0200 Subject: [PATCH 4/4] Fix linting --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 291aa939..3f5ec412 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -81,4 +81,4 @@ Initial release of nf-core/funcscan, created with the [nf-core](https://nf-co.re ### `Dependencies` -### `Deprecated` \ No newline at end of file +### `Deprecated`