diff --git a/README.md b/README.md index 7fbca37..bd047f6 100644 --- a/README.md +++ b/README.md @@ -35,11 +35,11 @@ The pipeline is built using [Nextflow](https://www.nextflow.io), a workflow tool nextflow run nf-core/hlatyping -profile --input '*_R{1,2}.fastq.gz' ``` -See [usage docs](docs/usage.md) for all of the available options when running the pipeline. +See [usage docs](https://nf-co.re/hlatyping/usage) for all of the available options when running the pipeline. ## Documentation -The nf-core/hlatyping pipeline comes with documentation about the pipeline which you can read at [https://nf-core/hlatyping/docs](https://nf-core/hlatyping/docs) or find in the [`docs/` directory](docs). +The nf-core/hlatyping pipeline comes with documentation about the pipeline which you can read at [https://nf-co.re/hlatyping](https://nf-co.re/hlatyping). ### Pipeline DAG