diff --git a/CHANGELOG.md b/CHANGELOG.md index 85679e00..07028a57 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -12,14 +12,12 @@ ### Software updates * _new dependency_: pigz `2.3.4` -* Python base `2.7` > `3.8.2` +* Python base `2.7` > `3.7.3` * FastQC `0.11.8` > `0.11.9` * TrimGalore! `0.6.4` > `0.6.5` -* Bowtie2 `2.3.5` > `2.4.1` * HiSAT2 `2.1.0` > `2.2.0` * Bismark `0.22.2` > `0.22.3` * Qualimap `2.2.2c` > `2.2.2d` -* Samtools `1.9` > `1.10` * Picard `2.21.3` > `2.22.2` * MethylDackel `0.4.0` > `0.5.0` * MultiQC `1.7` > `1.8` diff --git a/environment.yml b/environment.yml index 6561ad0e..892c60fa 100644 --- a/environment.yml +++ b/environment.yml @@ -7,7 +7,7 @@ channels: - defaults dependencies: # nf-core dependencies - - conda-forge::python=3.8.2 + - conda-forge::python=3.7.3 - conda-forge::markdown=3.2.1 - conda-forge::pymdown-extensions=6.0 - conda-forge::pygments=2.6.1 @@ -15,8 +15,8 @@ dependencies: - bioconda::fastqc=0.11.9 # Default bismark pipeline - bioconda::trim-galore=0.6.5 - - bioconda::samtools=1.10 - - bioconda::bowtie2=2.4.1 + - bioconda::samtools=1.9 + - bioconda::bowtie2=2.3.5 - bioconda::hisat2=2.2.0 - bioconda::bismark=0.22.3 - bioconda::qualimap=2.2.2d