From 7c42783d2f2a3d754357994f774001a67160780e Mon Sep 17 00:00:00 2001 From: maxulysse Date: Wed, 2 Oct 2024 17:13:13 +0200 Subject: [PATCH 1/4] nf-core pipelines bump-version 3.17.0dev --- nextflow.config | 2 +- workflows/rnaseq/assets/multiqc/multiqc_config.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nextflow.config b/nextflow.config index d2b1f40a9..fe4d8d28f 100644 --- a/nextflow.config +++ b/nextflow.config @@ -345,7 +345,7 @@ manifest { description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control.""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '3.16.0' + version = '3.17.0dev' doi = 'https://doi.org/10.5281/zenodo.1400710' } diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml index dd8bc621c..9b8ee731a 100644 --- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml +++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml @@ -1,5 +1,5 @@ report_comment: > - This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation. + This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation. report_section_order: # Important checks and failures sample-status: From 31656f82b8ca869a48b366d521b2de713584ecf4 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Wed, 2 Oct 2024 17:13:51 +0200 Subject: [PATCH 2/4] update CHANGELOG --- CHANGELOG.md | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 8de447e70..3c9e7837d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,29 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## dev + +### Credits + +Special thanks to the following for their contributions to the release: + +- [Maxime Garcia](https://github.com/maxulysse) + +### Enhancements & fixes + +- [PR #1396](https://github.com/nf-core/rnaseq/pull/1396) - Back to dev + +### Parameters + +### Software dependencies + +> **NB:** Dependency has been **updated** if both old and new version information is present. +> +> **NB:** Dependency has been **added** if just the new version information is present. +> +> **NB:** Dependency has been **removed** if new version information isn't present. + + ## [[3.16.0](https://github.com/nf-core/rnaseq/releases/tag/3.16.0)] - 2024-10-02 ### Credits From 9d5fe3c31bafb534f39ab85e329d5b2a0111d589 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Wed, 2 Oct 2024 17:15:09 +0200 Subject: [PATCH 3/4] prettier --- CHANGELOG.md | 1 - 1 file changed, 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3c9e7837d..3ee85588b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -25,7 +25,6 @@ Special thanks to the following for their contributions to the release: > > **NB:** Dependency has been **removed** if new version information isn't present. - ## [[3.16.0](https://github.com/nf-core/rnaseq/releases/tag/3.16.0)] - 2024-10-02 ### Credits From 51c0ca95adba04e6e967f885b96e3dccb669239f Mon Sep 17 00:00:00 2001 From: maxulysse Date: Wed, 2 Oct 2024 17:18:39 +0200 Subject: [PATCH 4/4] update pipeline version in snapshots --- tests/default.nf.test.snap | 4 ++-- tests/featurecounts_group_type.nf.test.snap | 4 ++-- tests/hisat2.nf.test.snap | 4 ++-- tests/kallisto.nf.test.snap | 4 ++-- tests/min_mapped_reads.nf.test.snap | 4 ++-- tests/remove_ribo_rna.nf.test.snap | 4 ++-- tests/salmon.nf.test.snap | 4 ++-- tests/skip_qc.nf.test.snap | 4 ++-- tests/skip_trimming.nf.test.snap | 2 +- tests/star_rsem.nf.test.snap | 4 ++-- 10 files changed, 19 insertions(+), 19 deletions(-) diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap index 296b93241..5bddc1cff 100644 --- a/tests/default.nf.test.snap +++ b/tests/default.nf.test.snap @@ -43,7 +43,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -227,7 +227,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap index ee17ab23d..d1f6cfb9c 100644 --- a/tests/featurecounts_group_type.nf.test.snap +++ b/tests/featurecounts_group_type.nf.test.snap @@ -43,7 +43,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -221,7 +221,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap index 4de59e1ae..8899222be 100644 --- a/tests/hisat2.nf.test.snap +++ b/tests/hisat2.nf.test.snap @@ -44,7 +44,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -224,7 +224,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap index 764adab68..4bb2324e3 100644 --- a/tests/kallisto.nf.test.snap +++ b/tests/kallisto.nf.test.snap @@ -56,7 +56,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -305,7 +305,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap index 1533ec60d..ce656d979 100644 --- a/tests/min_mapped_reads.nf.test.snap +++ b/tests/min_mapped_reads.nf.test.snap @@ -134,7 +134,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -1321,7 +1321,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap index 6097461ef..da224c5e5 100644 --- a/tests/remove_ribo_rna.nf.test.snap +++ b/tests/remove_ribo_rna.nf.test.snap @@ -140,7 +140,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -1571,7 +1571,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap index c528c6180..0adf4ff4d 100644 --- a/tests/salmon.nf.test.snap +++ b/tests/salmon.nf.test.snap @@ -50,7 +50,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -378,7 +378,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap index ffb89c42c..3d2688737 100644 --- a/tests/skip_qc.nf.test.snap +++ b/tests/skip_qc.nf.test.snap @@ -40,7 +40,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -169,7 +169,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap index 775d007ea..715c0604b 100644 --- a/tests/skip_trimming.nf.test.snap +++ b/tests/skip_trimming.nf.test.snap @@ -130,7 +130,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap index ebf025d71..51411c86c 100644 --- a/tests/star_rsem.nf.test.snap +++ b/tests/star_rsem.nf.test.snap @@ -134,7 +134,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -1450,7 +1450,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.0" + "nf-core/rnaseq": "v3.17.0dev" } }, [