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SNP #1780

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zbaida-achraf opened this issue Jan 27, 2025 · 1 comment

zbaida-achraf commented Jan 27, 2025

Hello, I hope you're doing well.

I have a long RNA dataset, and I would like to execute a pipeline to complete the following steps:

Use Cutadapt to filter and retain only the sequences with a quality score greater than 30.
Employ Bowtie for alignment tasks.
Utilize GATK to identify SNPs and assign their IDs using a dbSNP database.

Contributor

FriederikeHanssen commented Jan 27, 2025

Hey! sarek is aimed at DNA sequencing Data, you might want to check out https://nf-co.re/rnavar/1.0.0/ or https://nf-co.re/nanoseq/3.1.0/. I'd also recommend joining the slack space https://nf-co.re/join

FriederikeHanssen closed this as completed

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