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Adding support for detection of novel miRNA, also alignment against piRNA #32

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shashwatsahay opened this issue Jan 14, 2020 · 3 comments
Open

Adding support for detection of novel miRNA, also alignment against piRNA #32

shashwatsahay opened this issue Jan 14, 2020 · 3 comments
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enhancement New feature or request

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@shashwatsahay
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Will this something you will be adding in the future?

I am currently working on this part.
@lpantano
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If you work on this, it would be great, not support yet.

@apeltzer apeltzer added the enhancement New feature or request label Aug 8, 2024
@Adele-Mangelinck
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Hello,
Thank you for developing such as great pipeline.
I have a similar frustration with a lot of reads falling into the "Unknown" RNA category of miRTrace. However, I have seen that miRTrace allows for the addition of custom databases. Could this option be implemented in smrnaseq with adequate references to identify other types of long and small non-coding RNAs such as piRNAs (but also snRNAs, snoRNAs, etc.)?

@lpantano lpantano moved this to Todo - Medium Priority in smrnaseq Feb 10, 2025
@lpantano
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thank you, we have added to the project roadmap. Hopefully we can do something in the next hackathon.

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enhancement New feature or request
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smrnaseq
Status: Todo - Medium Priority
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@lpantano @apeltzer @shashwatsahay @Adele-Mangelinck