You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hello, I met a problem asking for help.
It seems that conda cannot install bowtie1.3.0-2, so the program stopped. I searched bowtie packages through 'conda search bowtie' and found that only bowtie1.3.0 is available and bowtie1.3.0-2 does not exist. I installed bowtie1.3.0 but did not solve this problem. I also searched bowtie in many other conda channels, but did not find anything name bowtie1.3.0-2. I even renamed bowtie as bowtie1.3.0-2 but did not prevented the pipeline from installing bowtie1.3.0-2 online.
Thanks for your advice!
Command used and terminal output
nextflow run nf-core/smrnaseq --input ./samplesheet2.csv --outdir ./results --genome GRCh38 -profile conda --mirtrace_species hsa --three_prime_adapter AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA -r devCreating env using conda: bowtie=1.3.0-2 bioconda::samtools=1.13 [cache /home/lang/work/conda/env-15daa4098f37a607b35089adcaff6190]WARN: Access to undefined parameter `fasta` -- Initialise it to a default value eg. `params.fasta = some_value`ERROR ~ Error executing process > 'NFCORE_SMRNASEQ:MIRNA_QUANT:BOWTIE_MAP_MATURE (1)'Caused by: Failed to create Conda environment command: conda create --mkdir --yes --quiet --prefix /home/lang/work/conda/env-15daa4098f37a607b35089adcaff6190 bowtie=1.3.0-2 bioconda::samtools=1.13 status : 1 message: Channels: - defaults - bioconda Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed PackagesNotFoundError: The following packages are not available from current channels: - bioconda::samtools==1.13 - bowtie=1.3.0-2* Current channels: - defaults - https://conda.anaconda.org/bioconda To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. -- Check '.nextflow.log' file for details
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered:
Description of the bug
Hello, I met a problem asking for help.
It seems that conda cannot install bowtie1.3.0-2, so the program stopped. I searched bowtie packages through 'conda search bowtie' and found that only bowtie1.3.0 is available and bowtie1.3.0-2 does not exist. I installed bowtie1.3.0 but did not solve this problem. I also searched bowtie in many other conda channels, but did not find anything name bowtie1.3.0-2. I even renamed bowtie as bowtie1.3.0-2 but did not prevented the pipeline from installing bowtie1.3.0-2 online.
Thanks for your advice!
Command used and terminal output
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered: