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pyproject.toml
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[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"
[project]
name = "vambn"
requires-python = ">=3.11,<4.0"
dependencies = [
"mkdocstrings-python (>=1.10.5,<2.0.0)",
"mkdocs-material @ git+https://github.com/squidfunk/mkdocs-material.git",
"snakemake (>=8.27.1,<9.0.0)",
"pandas (>=2.2.3,<3.0.0)",
"torch (>=2.5.1,<3.0.0)",
"scipy (>=1.15.0,<2.0.0)",
"optuna (==3.5.0)",
"scikit-learn (>=1.2.1,<2.0.0)",
"mlflow (>=2.1.1,<3.0.0)",
"typer (==0.9.0)",
"plotly (>=5.13.0,<6.0.0)",
"seaborn (>=0.12.2,<0.13.0)",
"matplotlib (>=3.7.0,<4.0.0)",
"openpyxl (>=3.1.2,<4.0.0)",
"sqlalchemy (==1.4.46)",
"protobuf (==3.20)",
"plotnine (>=0.12.4,<0.13.0)",
"lightning (>=2.0.1,<3.0.0)",
"kaleido (==0.2.1)",
"cairosvg (>=2.7.1,<3.0.0)",
"typeguard (>=4.1.5,<5.0.0)",
"setuptools-cuda (>=0.0.6,<0.0.7)",
"torchmetrics (>=1.2.0,<2.0.0)",
"pydantic (>=2.4.2,<3.0.0)",
"jupyter (>=1.0.0,<2.0.0)",
"wandb (>=0.16.0,<0.17.0)",
"tensorboardx (>=2.6.2.2,<3.0.0.0)",
"tensorboard (>=2.15.1,<3.0.0)",
"pymysql (>=1.1.0,<2.0.0)",
"dill (>=0.3.7,<0.4.0)",
"paramiko (>=3.3.1,<4.0.0)",
"pysftp (>=0.2.9,<0.3.0)",
"psycopg2-binary (>=2.9.9,<3.0.0)",
"qpth (>=0.0.16,<0.0.17)",
"sweetviz (>=2.3.1,<3.0.0)",
"pulp (==2.7)",
"umap-learn (>=0.5.5,<0.6.0)",
"radian (>=0.6.12,<0.7.0)",
"syndat (>=0.0.2,<0.0.3)",
"mkdocs (>=1.6.0,<2.0.0)",
"mkdocstrings (>=0.27.0,<0.28.0)",
"pymdown-extensions (>=10.8.1,<11.0.0)",
"mkdocs-autorefs (>=1.2.0,<2.0.0)",
]
[tool.poetry]
requires-poetry = ">=2.0"
name = "vambn"
version = "2.0.0"
description = ""
authors = [
"Manuel Lentzen <[email protected]>",
"Sophia Krix <[email protected]>",
"Diego Valderama <[email protected]",
"Tamara Raschka <[email protected]>",
]
readme = "README.md"
[[tool.poetry.packages]]
include = "vambn"
[[tool.poetry.source]]
name = "torch"
url = "https://download.pytorch.org/whl"
priority = "explicit"
[tool.commitizen]
name = "cz_conventional_commits"
version = "2.0.0"
tag_format = "v$version"
[tool.ruff]
line-length = 80
fix = true
indent-width = 4
target-version = "py311"
ignore-init-module-imports = true
exclude = ["**/__init__.py"]
[tool.pytpye]
disable = ["recursion-error"]
[tool.ruff.format]
quote-style = "double"
[tool.poetry.dependencies.torchvision]
version = "0.17.0+cpu"
source = "torch"
[tool.ruff.lint.pydocstyle]
convention = "google"
[tool.ruff.lint.pycodestyle]
max-line-length = 80
ignore-overlong-task-comments = false
max-doc-length = 80
[tool.poetry.group.dev.dependencies]
mypy = "^0.991"
black = "^22.12.0"
flake8 = "^6.0.0"
commitizen = "^2.40.0"
pytest = "^7.2.1"
autopep8 = "^2.0.1"
yapf = "^0.32.0"
isort = "^5.11.4"
pytest-xdist = "^3.2.0"
autoflake = "^2.2.1"
pytype = "^2023.10.31"
pyre-check = "^0.9.19"
ruff = "^0.1.5"
vulture = "^2.11"
pyright = "^1.1.350"
rope = "^1.13.0"
ipykernel = "^6.29.5"