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FimH typing was not performed #31

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nmquijada opened this issue Sep 16, 2020 · 1 comment
Closed

FimH typing was not performed #31

nmquijada opened this issue Sep 16, 2020 · 1 comment
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bug Something isn't working fimH-typing

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@nmquijada
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If you are using tormes with --genera Escherichia option enabled and you get a "warning" because the FimHTyper is not working, it migh be due because of the lack of one Perl package.
For solving this issue:

conda activate tormes-1.2.0
conda install -c bioconda perl-try-tiny-retry=0.004

This bug will be fixed in the next tormes release.
Sorry for the inconveniences,
Narciso
@nmquijada nmquijada added bug Something isn't working fimH-typing labels Sep 16, 2020
@nmquijada nmquijada pinned this issue Sep 16, 2020
@nmquijada
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Fixed in version 1.2.1

@nmquijada nmquijada unpinned this issue Oct 7, 2020
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