diff --git a/docs/test.rst b/docs/test.rst index 0187ab8..f2c4c82 100755 --- a/docs/test.rst +++ b/docs/test.rst @@ -33,7 +33,8 @@ Running entire modPhred pipeline with live basecalling (~6 minutes using RTX2080 acc=PRJEB22772 ~/src/modPhred/run -f ref/ECOLI.fa -o modPhred/$acc -i $acc/* -t4 --host ~/src/ont-guppy_3.6.1/bin/guppy_basecall_server -Note, you can enable automatic removal of intermediate files (FastQ/M) using ``--cleanup``. +Note, you can enable automatic removal of intermediate files (FastQ/M) using ``--cleanup``. + Instead you can run all steps one-by-one as follow: .. code-block:: bash