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Thanks, resolved by: #117 If that's what you expect, then let's close it! |
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e.g. , when
pairtools flip --chroms-path hg38.reduced.chrom.sizes p1.pairs
, wherehg38.reduced.chrom.sizes
does not have un-assembled contigs - it fails when encounters unrecognized name - e.g.KeyError: 'chrUn_KI270438v1'
in the same situation
pairtools parse
behaves differently - it flips what it can according tohg38.reduced.chrom.sizes
and flips lexicographically everything elseno big deal - but we'd rather have it documented - to fix later
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