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[PRE REVIEW]: TAXPASTA: TAXonomic Profile Aggregation and STAndardisation #5622

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editorialbot opened this issue Jul 6, 2023 · 21 comments
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Makefile pre-review pyOpenSci Submissions associated with pyOpenSci TeX Track: 2 (BCM) Biomedical Engineering, Biosciences, Chemistry, and Materials

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editorialbot commented Jul 6, 2023

Submitting author: @Midnighter (Moritz Emanuel Beber)
Repository: https://github.com/taxprofiler/taxpasta
Branch with paper.md (empty if default branch): joss-paper
Version: 0.4.0
Editor: @Kevin-Mattheus-Moerman
Reviewers: @Kevin-Mattheus-Moerman
Managing EiC: Kevin M. Moerman

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HTML: <a href="https://joss.theoj.org/papers/dabb68f6dd8f217e52fab2c06178b6d6"><img src="https://joss.theoj.org/papers/dabb68f6dd8f217e52fab2c06178b6d6/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/dabb68f6dd8f217e52fab2c06178b6d6/status.svg)](https://joss.theoj.org/papers/dabb68f6dd8f217e52fab2c06178b6d6)

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Thanks for submitting your paper to JOSS @Midnighter. Currently, there isn't a JOSS editor assigned to your paper.

@Midnighter if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

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@editorialbot editorialbot added pre-review Track: 2 (BCM) Biomedical Engineering, Biosciences, Chemistry, and Materials labels Jul 6, 2023
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Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf

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Software report:

github.com/AlDanial/cloc v 1.88  T=0.01 s (833.8 files/s, 84630.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
TeX                              1             21              0            294
Markdown                         1             20              0            153
make                             1              8             24             49
YAML                             3              4              0             36
-------------------------------------------------------------------------------
SUM:                             6             53             24            532
-------------------------------------------------------------------------------


gitinspector failed to run statistical information for the repository

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Wordcount for paper.md is 1181

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Failed to discover a valid open source license

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@Midnighter
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Hmm, not sure about the error. The paper compiles fine using the Docker image. It looks like something in the retrieval process is failing.

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@editorialbot generate pdf

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@openjournals/dev can you see what is going on here? ☝️

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@editorialbot assign me as editor

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Assigned! @Kevin-Mattheus-Moerman is now the editor

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@editorialbot add @Kevin-Mattheus-Moerman as reviewer

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@Kevin-Mattheus-Moerman added to the reviewers list!

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xuanxu commented Jul 7, 2023

There is a problem with the format of the date in the paper.md metadata, merging this PR should fix it

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@Midnighter ☝️ can you pick this up? Thanks

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jfy133 commented Jul 7, 2023

I've merged it on @Midnighter 's behalf (as co-author)

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jfy133 commented Jul 7, 2023

@editorialbot generate pdf

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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The work submitted here has been reviewed/accepted by pyOpenSci, see here: pyOpenSci/software-submission#84

@Kevin-Mattheus-Moerman Kevin-Mattheus-Moerman added the pyOpenSci Submissions associated with pyOpenSci label Jul 7, 2023
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@editorialbot start review

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OK, I've started the review over in #5627.

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