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[PRE REVIEW]: modisfast: An R package for fast and efficient access to MODIS, VIIRS and GPM Earth Observation data #7006

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editorialbot opened this issue Jul 18, 2024 · 84 comments
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[PRE REVIEW]: modisfast: An R package for fast and efficient access to MODIS, VIIRS and GPM Earth Observation data #7006

editorialbot opened this issue Jul 18, 2024 · 84 comments
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pre-review R TeX Track: 6 (ESE) Earth Sciences and Ecology

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editorialbot commented Jul 18, 2024 •
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Submitting author: @ptaconet (Paul Taconet)
Repository: https://github.com/ptaconet/modisfast
Branch with paper.md (empty if default branch):
Version: 0.9.2
Editor: @mikemahoney218
Reviewers: @rmendels, @V-Agudetse
Managing EiC: Kristen Thyng

Status

status

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HTML: <a href="https://joss.theoj.org/papers/abd5750a442de6a9d95b60bf49c440cb"><img src="https://joss.theoj.org/papers/abd5750a442de6a9d95b60bf49c440cb/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/abd5750a442de6a9d95b60bf49c440cb/status.svg)](https://joss.theoj.org/papers/abd5750a442de6a9d95b60bf49c440cb)

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@editorialbot editorialbot added pre-review Track: 6 (ESE) Earth Sciences and Ecology labels Jul 18, 2024
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Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.07 s (1146.1 files/s, 263932.1 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                            18            532            223           4644
JavaScript                      13            812            547           4232
Markdown                         6            254              0           2491
CSS                             11            177            137           1190
R                               18            328            654            795
Rmd                              4            251            361            210
TeX                              1             16              0            164
YAML                             5             31             27            156
CSV                              1              0              0             78
XML                              1              0              0             57
JSON                             1              0              0             44
SVG                              1              0              1             11
-------------------------------------------------------------------------------
SUM:                            80           2401           1950          14072
-------------------------------------------------------------------------------

Commit count by author:

    58	Paul Taconet
    55	ptaconet
     1	floriandeboissieu

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Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1016/S0034-4257(02)00084-6 is OK
- 10.1016/j.rse.2023.113963 is OK
- 10.1175/bams-d-15-00306.1 is OK
- 10.21105/joss.01686 is OK
- 10.5281/zenodo.5884351 is OK
- 10.32614/RJ-2018-009 is OK
- 10.1016/j.cageo.2016.08.020 is OK
- 10.5281/zenodo.7938190 is OK
- 10.5281/zenodo.3945409 is OK

MISSING DOIs

- No DOI given, and none found for title: A review of selected MODIS algorithms, data produc...
- No DOI given, and none found for title: R: A Language and Environment for Statistical Comp...
- No DOI given, and none found for title: terra: Spatial Data Analysis
- No DOI given, and none found for title: shiny: Web Application Framework for R
- No DOI given, and none found for title: The MODISTools package: an interface to the MODIS ...

INVALID DOIs

- https://doi.org/10.1016/j.techfore.2023.122357 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/j.rse.2017.06.031 is INVALID because of 'https://doi.org/' prefix

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Paper file info:

📄 Wordcount for paper.md is 2321

✅ The paper includes a Statement of need section

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License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

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⚠️ An error happened when generating the pdf.

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kthyng commented Jul 18, 2024

@ptaconet Could you try to fix the compilation error?

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kthyng commented Jul 18, 2024

@editorialbot generate pdf

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⚠️ An error happened when generating the pdf.

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kthyng commented Jul 18, 2024

ok just checking

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⚠️ An error happened when generating the pdf.

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Hello @ptaconet, here are the things you can ask me to do:


# List all available commands
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# Get a list of all editors's GitHub handles
@editorialbot list editors

# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist

# Set a value for branch
@editorialbot set joss-paper as branch

# Run checks and provide information on the repository and the paper file
@editorialbot check repository

# Check the references of the paper for missing DOIs
@editorialbot check references

# Generates the pdf paper
@editorialbot generate pdf

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@editorialbot generate preprint

# Get a link to the complete list of reviewers
@editorialbot list reviewers

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Five most similar historical JOSS papers:

Rdataretriever: R Interface to the Data Retriever
Submitting author: @henrykironde
Handling editor: @fboehm (Active)
Reviewers: @rmhogervorst, @jsgalan
Similarity score: 0.6954

dataaimsr: An R Client for the Australian Institute of Marine Science Data Platform API which provides easy access to AIMS Data Platform
Submitting author: @dbarneche
Handling editor: @kthyng (Active)
Reviewers: @kthyng
Similarity score: 0.6918

forestatrisk: a Python package for modelling and forecasting deforestation in the tropics
Submitting author: @ghislainv
Handling editor: @kbarnhart (Retired)
Reviewers: @molgor, @ethanwhite
Similarity score: 0.6905

chirps: API Client for the CHIRPS Precipitation Data in R
Submitting author: @kauedesousa
Handling editor: @danielskatz (Active)
Reviewers: @danielskatz
Similarity score: 0.6788

nasapower: A NASA POWER Global Meteorology, Surface Solar Energy and Climatology Data Client for R
Submitting author: @adamhsparks
Handling editor: @karthik (Retired)
Reviewers: @arfon
Similarity score: 0.6787

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Five most similar historical JOSS papers:

Rdataretriever: R Interface to the Data Retriever
Submitting author: @henrykironde
Handling editor: @fboehm (Active)
Reviewers: @rmhogervorst, @jsgalan
Similarity score: 0.6959

dataaimsr: An R Client for the Australian Institute of Marine Science Data Platform API which provides easy access to AIMS Data Platform
Submitting author: @dbarneche
Handling editor: @kthyng (Active)
Reviewers: @kthyng
Similarity score: 0.6925

forestatrisk: a Python package for modelling and forecasting deforestation in the tropics
Submitting author: @ghislainv
Handling editor: @kbarnhart (Retired)
Reviewers: @molgor, @ethanwhite
Similarity score: 0.6909

chirps: API Client for the CHIRPS Precipitation Data in R
Submitting author: @kauedesousa
Handling editor: @danielskatz (Active)
Reviewers: @danielskatz
Similarity score: 0.6801

nasapower: A NASA POWER Global Meteorology, Surface Solar Energy and Climatology Data Client for R
Submitting author: @adamhsparks
Handling editor: @karthik (Retired)
Reviewers: @arfon
Similarity score: 0.6793

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

@ptaconet
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@editorialbot generate pdf

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

@editorialbot
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Five most similar historical JOSS papers:

dataaimsr: An R Client for the Australian Institute of Marine Science Data Platform API which provides easy access to AIMS Data Platform
Submitting author: @dbarneche
Handling editor: @kthyng (Active)
Reviewers: @kthyng
Similarity score: 0.6825

Rdataretriever: R Interface to the Data Retriever
Submitting author: @henrykironde
Handling editor: @fboehm (Active)
Reviewers: @rmhogervorst, @jsgalan
Similarity score: 0.6799

forestatrisk: a Python package for modelling and forecasting deforestation in the tropics
Submitting author: @ghislainv
Handling editor: @kbarnhart (Retired)
Reviewers: @molgor, @ethanwhite
Similarity score: 0.6679

chirps: API Client for the CHIRPS Precipitation Data in R
Submitting author: @kauedesousa
Handling editor: @danielskatz (Active)
Reviewers: @danielskatz
Similarity score: 0.6651

riversCentralAsia: An R package to support data pre- and postprocessing for hydrological modelling with RS MINERVE
Submitting author: @mabesa
Handling editor: @crvernon (Active)
Reviewers: @mengqi-z, @tonyewong
Similarity score: 0.6638

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

@ptaconet
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@editorialbot generate pdf

@editorialbot
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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

@editorialbot
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Collaborator Author

Five most similar historical JOSS papers:

dataaimsr: An R Client for the Australian Institute of Marine Science Data Platform API which provides easy access to AIMS Data Platform
Submitting author: @dbarneche
Handling editor: @kthyng (Active)
Reviewers: @kthyng
Similarity score: 0.6779

Rdataretriever: R Interface to the Data Retriever
Submitting author: @henrykironde
Handling editor: @fboehm (Active)
Reviewers: @rmhogervorst, @jsgalan
Similarity score: 0.6677

chirps: API Client for the CHIRPS Precipitation Data in R
Submitting author: @kauedesousa
Handling editor: @danielskatz (Active)
Reviewers: @danielskatz
Similarity score: 0.6670

nasapower: A NASA POWER Global Meteorology, Surface Solar Energy and Climatology Data Client for R
Submitting author: @adamhsparks
Handling editor: @karthik (Retired)
Reviewers: @arfon
Similarity score: 0.6581

inAccessMod: An R package to automate data downloading and processing for AccessMod
Submitting author: @ptimoner
Handling editor: @arfon (Active)
Reviewers: @ConnorDonegan, @mponce0
Similarity score: 0.6537

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.07 s (1195.9 files/s, 275096.7 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                            23            694            128           5844
JavaScript                      13            812            547           4232
Markdown                         8            337              0           2719
CSS                             11            177            137           1190
R                               18            328            654            795
Rmd                              5            316            437            315
TeX                              1             16              0            159
YAML                             5             31             27            157
CSV                              1              0              0             78
XML                              1              0              0             57
JSON                             1              0              0             44
SVG                              1              0              1             11
-------------------------------------------------------------------------------
SUM:                            88           2711           1931          15601
-------------------------------------------------------------------------------

Commit count by author:

    69	Paul Taconet
    55	ptaconet
     1	floriandeboissieu

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Paper file info:

📄 Wordcount for paper.md is 1185

✅ The paper includes a Statement of need section

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License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

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@editorialbot check repository

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.08 s (1172.8 files/s, 270060.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                            23            694            128           5844
JavaScript                      13            812            547           4232
Markdown                         8            339              0           2734
CSS                             11            177            137           1190
R                               18            328            654            795
Rmd                              5            318            439            315
TeX                              1             16              0            159
YAML                             5             31             27            157
CSV                              1              0              0             78
XML                              1              0              0             57
JSON                             1              0              0             44
SVG                              1              0              1             11
-------------------------------------------------------------------------------
SUM:                            88           2715           1933          15616
-------------------------------------------------------------------------------

Commit count by author:

    70	Paul Taconet
    55	ptaconet
     1	floriandeboissieu

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Paper file info:

📄 Wordcount for paper.md is 1109

✅ The paper includes a Statement of need section

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License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

@ptaconet
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@editorialbot generate pdf

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

@editorialbot
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Five most similar historical JOSS papers:

Rdataretriever: R Interface to the Data Retriever
Submitting author: @henrykironde
Handling editor: @fboehm (Active)
Reviewers: @rmhogervorst, @jsgalan
Similarity score: 0.7421

inAccessMod: An R package to automate data downloading and processing for AccessMod
Submitting author: @ptimoner
Handling editor: @arfon (Active)
Reviewers: @ConnorDonegan, @mponce0
Similarity score: 0.7365

HyRiver: Hydroclimate Data Retriever
Submitting author: @cheginit
Handling editor: @kthyng (Active)
Reviewers: @raoulcollenteur, @arbennett
Similarity score: 0.7329

MetObs - a Python toolkit for using non-traditional meteorological observations
Submitting author: @vergauwenthomas
Handling editor: @hugoledoux (Active)
Reviewers: @ashwinvis, @Zeitsperre
Similarity score: 0.7322

nasapower: A NASA POWER Global Meteorology, Surface Solar Energy and Climatology Data Client for R
Submitting author: @adamhsparks
Handling editor: @karthik (Retired)
Reviewers: @arfon
Similarity score: 0.7280

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

@ptaconet
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@editorialbot check repository

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.08 s (1168.4 files/s, 268253.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                            23            694            128           5844
JavaScript                      13            812            547           4232
Markdown                         8            338              0           2732
CSS                             11            177            137           1190
R                               18            328            654            795
Rmd                              5            318            439            315
YAML                             5             31             27            157
TeX                              1             10              0            108
CSV                              1              0              0             78
XML                              1              0              0             57
JSON                             1              0              0             44
SVG                              1              0              1             11
-------------------------------------------------------------------------------
SUM:                            88           2708           1933          15563
-------------------------------------------------------------------------------

Commit count by author:

    71	Paul Taconet
    55	ptaconet
     1	floriandeboissieu

@ptaconet
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@editorialbot generate pdf

@editorialbot
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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

@editorialbot
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Collaborator Author

Paper file info:

📄 Wordcount for paper.md is 987

✅ The paper includes a Statement of need section

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License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

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Five most similar historical JOSS papers:

rmap: An R package to plot and compare tabular data on customizable maps across scenarios and time
Submitting author: @zarrarkhan
Handling editor: @hugoledoux (Active)
Reviewers: @CamilleMorlighem, @maczokni
Similarity score: 0.7359

Rdataretriever: R Interface to the Data Retriever
Submitting author: @henrykironde
Handling editor: @fboehm (Active)
Reviewers: @rmhogervorst, @jsgalan
Similarity score: 0.7349

nasapower: A NASA POWER Global Meteorology, Surface Solar Energy and Climatology Data Client for R
Submitting author: @adamhsparks
Handling editor: @karthik (Retired)
Reviewers: @arfon
Similarity score: 0.7294

fishRman: A Shiny R Dashboard improving Global Fishing Watch data availability
Submitting author: @Shyentist
Handling editor: @KristinaRiemer (Retired)
Reviewers: @jules32, @HeatherWelch
Similarity score: 0.7192

inAccessMod: An R package to automate data downloading and processing for AccessMod
Submitting author: @ptimoner
Handling editor: @arfon (Active)
Reviewers: @ConnorDonegan, @mponce0
Similarity score: 0.7184

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

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@mikemahoney218 @kthyng I have reduced the manuscript length to less than 1000 words, as requested. I guess the paper is now ready for review.

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I may suggest LouiseLeroux as a potential reviewer for the paper

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ptaconet commented Sep 9, 2024

Hi @mikemahoney218 , just to know if the review process is still ongoing ?
Best

@mikemahoney218
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mikemahoney218 commented Sep 11, 2024 •
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Apologies @ptaconet , I missed your comment that the paper was ready for review. Let me start reaching out to reviewers now. (Edit to confirm I've invited my first round of potential reviewers)

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Hi @mikemahoney218 , just to know if you have any news about potential reviewers ?
Best,
paul

@mikemahoney218
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Apologies -- I'm still reaching out to reviewers and discussing with the EiCs about this submission

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@editorialbot add @rmendels as reviewer

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@rmendels added to the reviewers list!

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@editorialbot add @V-Agudetse as reviewer

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@V-Agudetse added to the reviewers list!

@mikemahoney218
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@editorialbot start review

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OK, I've started the review over in #7343.

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