Fix the broken CICD

[epijim]

Issue description

Current CICD doesn't work... fix it.

Steps to reproduce the issue

Push a commit and Github actions doesnt work

What's the expected result?

• build and deploy docs
• README.rmd is built automatically
• check windows
• check ubuntu
• check osx
• calculate code coverage

[epijim]

testthat::expect_equal(list_survival, list_visR) does not equay the same in tests..

[epijim]

added - note fails but it's legitimate (e.g. package fails check rather than CICD). docs building and code coverage point at develop currently- needs to be repointed at master after @rebecca-albrecht and @DaZim make their merge in.

[epijim]

Updated it so that the README.md is autobuilt:

      - name: Deploy package
        run: |
          Rscript -e 'rmarkdown::render("README.rmd")'
          git config --local user.email "[email protected]"
          git config --local user.name "GitHub Actions"
          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'

[epijim]

rename the branch master to main

[epijim]

and fastforward to where develop istoday

[epijim]

CICD appears to be working - e.g. fails are legitimate due to package having CRAN check warnings.