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c302_A_Muscles.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Muscles">
<notes>
Parameters and setting used to generate this network:
Data reader: SpreadsheetDataReader
c302 version: 0.9.1
owmeta version: - not installed -
owmeta_core version: - not installed -
Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR']
Cell stimulated: ['AVBL', 'AVBR']
Connection: []
Connection numbers overridden: None
Connection numbers scaled: None
Connection polarities override: None
Muscles: All muscles
Known BioParameters:
BioParameter: chem_exc_syn_decay = 5 ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_exc_syn_erev = 0mV (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_exc_syn_rise = 3ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_decay = 200 ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_erev = -80mV (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_rise = 3ms (SRC: BlindGuess, certainty 0.1)
BioParameter: elec_syn_decay = 10ms (SRC: BlindGuess, certainty 0.1)
BioParameter: elec_syn_erev = 0mV (SRC: BlindGuess, certainty 0.1)
BioParameter: elec_syn_rise = 3ms (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_C = 3pF (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_conductance = 0.1nS (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_leak_reversal = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_reset = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_thresh = -30mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_C = 3pF (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_conductance = 0.1nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_leak_reversal = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_reset = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_thresh = -30mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_chem_exc_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_chem_inh_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_elec_syn_gbase = 0nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_chem_exc_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_chem_inh_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_elec_syn_gbase = 0nS (SRC: BlindGuess, certainty 0.1)
BioParameter: unphysiological_offset_current = 5pA (SRC: Testing IClamp, certainty 0)
BioParameter: unphysiological_offset_current_del = 50 ms (SRC: Testing IClamp, certainty 0)
BioParameter: unphysiological_offset_current_dur = 900 ms (SRC: Testing IClamp, certainty 0)
</notes>
<expTwoSynapse id="neuron_to_neuron_elec_syn" gbase="0nS" erev="0mV" tauDecay="10ms" tauRise="3ms"/>
<expTwoSynapse id="neuron_to_neuron_exc_syn" gbase="0.01nS" erev="0mV" tauDecay="5 ms" tauRise="3ms"/>
<expTwoSynapse id="neuron_to_neuron_inh_syn" gbase="0.01nS" erev="-80mV" tauDecay="200 ms" tauRise="3ms"/>
<expTwoSynapse id="neuron_to_muscle_exc_syn" gbase="0.01nS" erev="0mV" tauDecay="5 ms" tauRise="3ms"/>
<expTwoSynapse id="neuron_to_muscle_inh_syn" gbase="0.01nS" erev="-80mV" tauDecay="200 ms" tauRise="3ms"/>
<iafCell id="generic_muscle_iaf_cell" leakReversal="-50mV" thresh="-30mV" reset="-50mV" C="3pF" leakConductance="0.1nS"/>
<iafCell id="generic_neuron_iaf_cell" leakReversal="-50mV" thresh="-30mV" reset="-50mV" C="3pF" leakConductance="0.1nS"/>
<pulseGenerator id="offset_current" delay="50 ms" duration="900 ms" amplitude="5pA"/>
<network id="c302_A_Muscles">
<property tag="recommended_duration_ms" value="1000"/>
<property tag="recommended_dt_ms" value="0.05"/>
<population id="AS1" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<property tag="OpenWormBackerAssignedName" value="Kottbusser Tor"/>
<instance id="0">
<location x="-0.275" y="-229.038000000000011" z="4.738"/>
</instance>
</population>
<population id="AS10" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-1.9" y="278.25" z="-24.0"/>
</instance>
</population>
<population id="AS11" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-1.8750001" y="315.699999999999989" z="-26.124998000000001"/>
</instance>
</population>
<population id="AS2" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<property tag="OpenWormBackerAssignedName" value="Geraldine"/>
<instance id="0">
<location x="-1.8750001" y="-203.875" z="-12.725"/>
</instance>
</population>
<population id="AS3" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-1.9" y="-151.400010000000009" z="-45.649997999999997"/>
</instance>
</population>
<population id="AS4" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-1.8750001" y="-90.200005000000004" z="-65.375"/>
</instance>
</population>
<population id="AS5" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-1.8750001" y="-3.7500002" z="-52.524999999999999"/>
</instance>
</population>
<population id="AS6" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-1.9" y="28.25" z="-34.25"/>
</instance>
</population>
<population id="AS7" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-1.9" y="119.900000000000006" z="3.9500003"/>
</instance>
</population>
<population id="AS8" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-1.9" y="181.849999999999994" z="-1.7750001"/>
</instance>
</population>
<population id="AS9" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-1.8750001" y="228.924990000000008" z="-14.5"/>
</instance>
</population>
<population id="AVAL" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value="1 0 .4"/>
<property tag="type" value="interneuron"/>
<property tag="receptor" value="GGR-3; GLR-1; GLR-2; GLR-4; GLR-5; NMR-1; NMR-2; NPR-4; UNC-8"/>
<property tag="neurotransmitter" value=""/>
<property tag="OpenWormBackerAssignedName" value="JUD"/>
<instance id="0">
<location x="-0.55" y="-271.5" z="37.982999999999997"/>
</instance>
</population>
<population id="AVAR" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value="1 0 .4"/>
<property tag="type" value="interneuron"/>
<property tag="receptor" value="GGR-3; GLR-1; GLR-2; GLR-4; GLR-5; NMR-1; NMR-2; NPR-4; UNC-8"/>
<property tag="neurotransmitter" value=""/>
<instance id="0">
<location x="-3.5" y="-271.5" z="37.982999999999997"/>
</instance>
</population>
<population id="AVBL" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value="1 0 .4"/>
<property tag="type" value="interneuron"/>
<property tag="receptor" value="GGR-3; GLR-1; GLR-5; LGC-55; SRA-11; UNC-8"/>
<property tag="neurotransmitter" value=""/>
<instance id="0">
<location x="0.225" y="-269.793999999999983" z="37.863002999999999"/>
</instance>
</population>
<population id="AVBR" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value="1 0 .4"/>
<property tag="type" value="interneuron"/>
<property tag="receptor" value="GGR-3; GLR-1; GLR-5; LGC-55; SRA-11; UNC-8"/>
<property tag="neurotransmitter" value=""/>
<property tag="OpenWormBackerAssignedName" value="mn"/>
<instance id="0">
<location x="-4.581" y="-269.793999999999983" z="37.863002999999999"/>
</instance>
</population>
<population id="AVDL" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value="1 0 .4"/>
<property tag="type" value="interneuron"/>
<property tag="receptor" value="GLR-1; GLR-2; GLR-5; NMR-1; NMR-2; PDFR-1; UNC-8"/>
<property tag="neurotransmitter" value=""/>
<instance id="0">
<location x="-0.167" y="-268.699999999999989" z="37.299999999999997"/>
</instance>
</population>
<population id="AVDR" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value="1 0 .4"/>
<property tag="type" value="interneuron"/>
<property tag="receptor" value="GLR-1; GLR-2; GLR-5; NMR-1; NMR-2; PDFR-1; UNC-8"/>
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