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c302_A_Syns.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Syns">
<notes>
Parameters and setting used to generate this network:
Data reader: SpreadsheetDataReader
c302 version: 0.9.1
owmeta version: - not installed -
owmeta_core version: - not installed -
Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2']
Cell stimulated: []
Connection: []
Connection numbers overridden: None
Connection numbers scaled: None
Connection polarities override: None
Muscles: ['MDL07']
Known BioParameters:
BioParameter: chem_exc_syn_decay = 10ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_exc_syn_erev = 0mV (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_exc_syn_rise = 3ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_decay = 10ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_erev = -80mV (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_rise = 3ms (SRC: BlindGuess, certainty 0.1)
BioParameter: elec_syn_decay = 10ms (SRC: BlindGuess, certainty 0.1)
BioParameter: elec_syn_erev = 0mV (SRC: BlindGuess, certainty 0.1)
BioParameter: elec_syn_rise = 3ms (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_C = 3pF (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_conductance = 0.1nS (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_leak_reversal = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_reset = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_iaf_thresh = -30mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_C = 3pF (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_conductance = 0.1nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_leak_reversal = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_reset = -50mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_iaf_thresh = -30mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_chem_exc_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_chem_inh_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_elec_syn_gbase = 0nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_chem_exc_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_chem_inh_syn_gbase = 0.01nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_elec_syn_gbase = 0nS (SRC: BlindGuess, certainty 0.1)
BioParameter: unphysiological_offset_current = 0pA (SRC: KnownError, certainty 0)
BioParameter: unphysiological_offset_current_del = 50 ms (SRC: Testing IClamp, certainty 0)
BioParameter: unphysiological_offset_current_dur = 200ms (SRC: KnownError, certainty 0)
</notes>
<expTwoSynapse id="neuron_to_neuron_inh_syn" gbase="0.01nS" erev="-80mV" tauDecay="10ms" tauRise="3ms"/>
<expTwoSynapse id="neuron_to_neuron_exc_syn" gbase="0.01nS" erev="0mV" tauDecay="10ms" tauRise="3ms"/>
<expTwoSynapse id="neuron_to_muscle_exc_syn" gbase="0.01nS" erev="0mV" tauDecay="10ms" tauRise="3ms"/>
<iafCell id="generic_muscle_iaf_cell" leakReversal="-50mV" thresh="-30mV" reset="-50mV" C="3pF" leakConductance="0.1nS"/>
<iafCell id="generic_neuron_iaf_cell" leakReversal="-50mV" thresh="-30mV" reset="-50mV" C="3pF" leakConductance="0.1nS"/>
<pulseGenerator id="offset_current" delay="50 ms" duration="200ms" amplitude="0pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_URYDL_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_VD12_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_AS2_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<network id="c302_A_Syns">
<property tag="recommended_duration_ms" value="3600"/>
<property tag="recommended_dt_ms" value="0.05"/>
<population id="AS2" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="ACR-14; ACR-15; CKR-2; DOP-1; DOP-3; LGC-46; NPR-3; UNC-63"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<property tag="OpenWormBackerAssignedName" value="Geraldine"/>
<instance id="0">
<location x="-1.8750001" y="-203.875" z="-12.725"/>
</instance>
</population>
<population id="SMDDR" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="LGC-55; NTR-2"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-7.4500003" y="-266.25" z="34.100000000000001"/>
</instance>
</population>
<population id="URYDL" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value="1 .2 1"/>
<property tag="type" value="sensory"/>
<property tag="receptor" value="LGC-53; PDFR-1; SER-1"/>
<property tag="neurotransmitter" value="Glutamate"/>
<instance id="0">
<location x="4.125" y="-281.425000000000011" z="51.899997999999997"/>
</instance>
</population>
<population id="VB11" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor; sensory"/>
<property tag="receptor" value="CKR-2; DOP-1; DOP-3; NPR-3"/>
<property tag="neurotransmitter" value="Acetylcholine"/>
<instance id="0">
<location x="-1.8249999" y="262.324999999999989" z="-21.949999999999999"/>
</instance>
</population>
<population id="VD12" component="generic_neuron_iaf_cell" size="1" type="populationList">
<property tag="color" value=".5 .4 1"/>
<property tag="type" value="motor"/>
<property tag="receptor" value="DOP-3; MOD-1; NPR-1; SER-2"/>
<property tag="neurotransmitter" value="GABA"/>
<instance id="0">
<location x="-0.75" y="345.5" z="-23.149999999999999"/>
</instance>
</population>
<population id="MDL07" component="generic_muscle_iaf_cell" size="1" type="populationList">
<property tag="color" value="0 .6 0"/>
<instance id="0">
<location x="80.0" y="-90.0" z="80.0"/>
</instance>
</population>
<projection id="NC_VD12_VB11_GABA" presynapticPopulation="VD12" postsynapticPopulation="VB11" synapse="neuron_to_neuron_inh_syn">
<connectionWD id="0" preCellId="../VD12/0/generic_neuron_iaf_cell" postCellId="../VB11/0/generic_neuron_iaf_cell" weight="1.0" delay="0ms"/>
</projection>
<projection id="NC_URYDL_SMDDR_Glutamate" presynapticPopulation="URYDL" postsynapticPopulation="SMDDR" synapse="neuron_to_neuron_exc_syn">
<connectionWD id="0" preCellId="../URYDL/0/generic_neuron_iaf_cell" postCellId="../SMDDR/0/generic_neuron_iaf_cell" weight="1.0" delay="0ms"/>
</projection>
<projection id="NC_AS2_MDL07_Acetylcholine" presynapticPopulation="AS2" postsynapticPopulation="MDL07" synapse="neuron_to_muscle_exc_syn">
<connection id="0" preCellId="../AS2/0/generic_neuron_iaf_cell" postCellId="../MDL07/0/generic_muscle_iaf_cell"/>
</projection>
<inputList id="Input_URYDL_stim_URYDL_1" population="URYDL" component="stim_URYDL_1">
<input id="0" target="../URYDL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_VD12_stim_VD12_1" population="VD12" component="stim_VD12_1">
<input id="0" target="../VD12/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_AS2_stim_AS2_1" population="AS2" component="stim_AS2_1">
<input id="0" target="../AS2/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_URYDL_stim_URYDL_2" population="URYDL" component="stim_URYDL_2">
<input id="0" target="../URYDL/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_VD12_stim_VD12_2" population="VD12" component="stim_VD12_2">
<input id="0" target="../VD12/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
<inputList id="Input_AS2_stim_AS2_2" population="AS2" component="stim_AS2_2">
<input id="0" target="../AS2/0/generic_neuron_iaf_cell" destination="synapses"/>
</inputList>
</network>
</neuroml>