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c302_D_Muscles.net.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_D_Muscles">
<notes>
Parameters and setting used to generate this network:
Data reader: SpreadsheetDataReader
c302 version: 0.9.1
owmeta version: - not installed -
owmeta_core version: - not installed -
Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR']
Cell stimulated: ['AVBL', 'AVBR']
Connection: []
Connection numbers overridden: None
Connection numbers scaled: None
Connection polarities override: None
Muscles: All muscles
Known BioParameters:
BioParameter: ca_boyle_erev = 40 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: ca_conc_decay_time = 11.5943 ms (SRC: BlindGuess, certainty 0.1)
BioParameter: ca_conc_rho = 0.000238919 mol_per_m_per_A_per_s (SRC: BlindGuess, certainty 0.1)
BioParameter: cell_diameter = 5 (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_exc_syn_decay = 5 ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_exc_syn_erev = 0 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_exc_syn_rise = 1 ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_decay = 200 ms (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_erev = -60 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: chem_inh_syn_rise = 2 ms (SRC: BlindGuess, certainty 0.1)
BioParameter: initial_memb_pot = -45 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: k_fast_erev = -60 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: k_slow_erev = -60 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: leak_erev = -50 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_ca_boyle_cond_density = 2 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_k_fast_cond_density = 0.2 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_k_slow_cond_density = 4 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_leak_cond_density = 0.005 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_length = 20 (SRC: BlindGuess, certainty 0.1)
BioParameter: muscle_spike_thresh = -26 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_ca_boyle_cond_density = 2 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_k_fast_cond_density = 0.2 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_k_slow_cond_density = 2 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_leak_cond_density = 0.02 mS_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_spike_thresh = -26 mV (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_chem_exc_syn_gbase = .01 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_chem_inh_syn_gbase = 3 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_muscle_elec_syn_gbase = 0.0005 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_chem_exc_syn_gbase = .01 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_chem_inh_syn_gbase = 3 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: neuron_to_neuron_elec_syn_gbase = 0.0005 nS (SRC: BlindGuess, certainty 0.1)
BioParameter: resistivity = 12 kohm_cm (SRC: BlindGuess, certainty 0.1)
BioParameter: specific_capacitance = 1 uF_per_cm2 (SRC: BlindGuess, certainty 0.1)
BioParameter: unphysiological_offset_current = 5pA (SRC: Testing IClamp, certainty 0)
BioParameter: unphysiological_offset_current_del = 50 ms (SRC: Testing IClamp, certainty 0)
BioParameter: unphysiological_offset_current_dur = 900 ms (SRC: Testing IClamp, certainty 0)
</notes>
<include href="cell_C.xml"/>
<include href="cells/AS1_D.cell.nml"/>
<include href="cells/AS10_D.cell.nml"/>
<include href="cells/AS11_D.cell.nml"/>
<include href="cells/AS2_D.cell.nml"/>
<include href="cells/AS3_D.cell.nml"/>
<include href="cells/AS4_D.cell.nml"/>
<include href="cells/AS5_D.cell.nml"/>
<include href="cells/AS6_D.cell.nml"/>
<include href="cells/AS7_D.cell.nml"/>
<include href="cells/AS8_D.cell.nml"/>
<include href="cells/AS9_D.cell.nml"/>
<include href="cells/AVAL_D.cell.nml"/>
<include href="cells/AVAR_D.cell.nml"/>
<include href="cells/AVBL_D.cell.nml"/>
<include href="cells/AVBR_D.cell.nml"/>
<include href="cells/AVDL_D.cell.nml"/>
<include href="cells/AVDR_D.cell.nml"/>
<include href="cells/AVFL_D.cell.nml"/>
<include href="cells/AVFR_D.cell.nml"/>
<include href="cells/AVKR_D.cell.nml"/>
<include href="cells/AVL_D.cell.nml"/>
<include href="cells/CEPVL_D.cell.nml"/>
<include href="cells/CEPVR_D.cell.nml"/>
<include href="cells/DA1_D.cell.nml"/>
<include href="cells/DA2_D.cell.nml"/>
<include href="cells/DA3_D.cell.nml"/>
<include href="cells/DA4_D.cell.nml"/>
<include href="cells/DA5_D.cell.nml"/>
<include href="cells/DA6_D.cell.nml"/>
<include href="cells/DA7_D.cell.nml"/>
<include href="cells/DA8_D.cell.nml"/>
<include href="cells/DA9_D.cell.nml"/>
<include href="cells/DB1_D.cell.nml"/>
<include href="cells/DB2_D.cell.nml"/>
<include href="cells/DB3_D.cell.nml"/>
<include href="cells/DB4_D.cell.nml"/>
<include href="cells/DB5_D.cell.nml"/>
<include href="cells/DB6_D.cell.nml"/>
<include href="cells/DB7_D.cell.nml"/>
<include href="cells/DD1_D.cell.nml"/>
<include href="cells/DD2_D.cell.nml"/>
<include href="cells/DD3_D.cell.nml"/>
<include href="cells/DD4_D.cell.nml"/>
<include href="cells/DD5_D.cell.nml"/>
<include href="cells/DD6_D.cell.nml"/>
<include href="cells/DVB_D.cell.nml"/>
<include href="cells/HSNL_D.cell.nml"/>
<include href="cells/HSNR_D.cell.nml"/>
<include href="cells/IL1DL_D.cell.nml"/>
<include href="cells/IL1DR_D.cell.nml"/>
<include href="cells/IL1L_D.cell.nml"/>
<include href="cells/IL1R_D.cell.nml"/>
<include href="cells/IL1VL_D.cell.nml"/>
<include href="cells/IL1VR_D.cell.nml"/>
<include href="cells/PDA_D.cell.nml"/>
<include href="cells/PDB_D.cell.nml"/>
<include href="cells/PVCL_D.cell.nml"/>
<include href="cells/PVCR_D.cell.nml"/>
<include href="cells/PVNL_D.cell.nml"/>
<include href="cells/PVNR_D.cell.nml"/>
<include href="cells/RID_D.cell.nml"/>
<include href="cells/RIML_D.cell.nml"/>
<include href="cells/RIMR_D.cell.nml"/>
<include href="cells/RIVL_D.cell.nml"/>
<include href="cells/RIVR_D.cell.nml"/>
<include href="cells/RMDDL_D.cell.nml"/>
<include href="cells/RMDDR_D.cell.nml"/>
<include href="cells/RMDL_D.cell.nml"/>
<include href="cells/RMDR_D.cell.nml"/>
<include href="cells/RMDVL_D.cell.nml"/>
<include href="cells/RMDVR_D.cell.nml"/>
<include href="cells/RMED_D.cell.nml"/>
<include href="cells/RMEL_D.cell.nml"/>
<include href="cells/RMER_D.cell.nml"/>
<include href="cells/RMEV_D.cell.nml"/>
<include href="cells/RMFL_D.cell.nml"/>
<include href="cells/RMGL_D.cell.nml"/>
<include href="cells/RMGR_D.cell.nml"/>
<include href="cells/RMHL_D.cell.nml"/>
<include href="cells/RMHR_D.cell.nml"/>
<include href="cells/SMBDL_D.cell.nml"/>
<include href="cells/SMBDR_D.cell.nml"/>
<include href="cells/SMBVL_D.cell.nml"/>
<include href="cells/SMBVR_D.cell.nml"/>
<include href="cells/SMDDL_D.cell.nml"/>
<include href="cells/SMDDR_D.cell.nml"/>
<include href="cells/SMDVL_D.cell.nml"/>
<include href="cells/SMDVR_D.cell.nml"/>
<include href="cells/URADL_D.cell.nml"/>
<include href="cells/URADR_D.cell.nml"/>
<include href="cells/URAVL_D.cell.nml"/>
<include href="cells/URAVR_D.cell.nml"/>
<include href="cells/VA1_D.cell.nml"/>
<include href="cells/VA10_D.cell.nml"/>
<include href="cells/VA11_D.cell.nml"/>
<include href="cells/VA12_D.cell.nml"/>
<include href="cells/VA2_D.cell.nml"/>
<include href="cells/VA3_D.cell.nml"/>
<include href="cells/VA4_D.cell.nml"/>
<include href="cells/VA5_D.cell.nml"/>
<include href="cells/VA6_D.cell.nml"/>
<include href="cells/VA7_D.cell.nml"/>
<include href="cells/VA8_D.cell.nml"/>
<include href="cells/VA9_D.cell.nml"/>
<include href="cells/VB1_D.cell.nml"/>
<include href="cells/VB10_D.cell.nml"/>
<include href="cells/VB11_D.cell.nml"/>
<include href="cells/VB2_D.cell.nml"/>
<include href="cells/VB3_D.cell.nml"/>
<include href="cells/VB4_D.cell.nml"/>
<include href="cells/VB5_D.cell.nml"/>
<include href="cells/VB6_D.cell.nml"/>
<include href="cells/VB7_D.cell.nml"/>
<include href="cells/VB8_D.cell.nml"/>
<include href="cells/VB9_D.cell.nml"/>
<include href="cells/VC1_D.cell.nml"/>
<include href="cells/VC2_D.cell.nml"/>
<include href="cells/VC3_D.cell.nml"/>
<include href="cells/VC4_D.cell.nml"/>
<include href="cells/VC5_D.cell.nml"/>
<include href="cells/VC6_D.cell.nml"/>
<include href="cells/VD1_D.cell.nml"/>
<include href="cells/VD10_D.cell.nml"/>
<include href="cells/VD11_D.cell.nml"/>
<include href="cells/VD12_D.cell.nml"/>
<include href="cells/VD13_D.cell.nml"/>
<include href="cells/VD2_D.cell.nml"/>
<include href="cells/VD3_D.cell.nml"/>
<include href="cells/VD4_D.cell.nml"/>
<include href="cells/VD5_D.cell.nml"/>
<include href="cells/VD6_D.cell.nml"/>
<include href="cells/VD7_D.cell.nml"/>
<include href="cells/VD8_D.cell.nml"/>
<include href="cells/VD9_D.cell.nml"/>
<fixedFactorConcentrationModel id="CaPool" ion="ca" restingConc="0 mM" decayConstant="11.5943 ms" rho="0.000238919 mol_per_m_per_A_per_s"/>
<expTwoSynapse id="neuron_to_neuron_exc_syn" gbase=".01 nS" erev="0 mV" tauDecay="5 ms" tauRise="1 ms"/>
<expTwoSynapse id="neuron_to_neuron_inh_syn" gbase="3 nS" erev="-60 mV" tauDecay="200 ms" tauRise="2 ms"/>
<expTwoSynapse id="neuron_to_muscle_exc_syn" gbase=".01 nS" erev="0 mV" tauDecay="5 ms" tauRise="1 ms"/>
<expTwoSynapse id="neuron_to_muscle_inh_syn" gbase="3 nS" erev="-60 mV" tauDecay="200 ms" tauRise="2 ms"/>
<gapJunction id="neuron_to_neuron_elec_syn" conductance="0.0005 nS"/>
<cell id="GenericMuscleCell">
<morphology id="morphology_GenericMuscleCell">
<segment id="0" name="soma">
<proximal x="0.0" y="0.0" z="0.0" diameter="5.0"/>
<distal x="0.0" y="20.0" z="0.0" diameter="5.0"/>
</segment>
</morphology>
<biophysicalProperties id="biophys_GenericMuscleCell">
<membraneProperties>
<channelDensity id="Leak_all" ionChannel="Leak" condDensity="0.005 mS_per_cm2" erev="-50 mV" ion="non_specific"/>
<channelDensity id="k_slow_all" ionChannel="k_slow" condDensity="4 mS_per_cm2" erev="-60 mV" ion="k"/>
<channelDensity id="k_fast_all" ionChannel="k_fast" condDensity="0.2 mS_per_cm2" erev="-60 mV" ion="k"/>
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