diff --git a/c302/__init__.py b/c302/__init__.py index 4ab74976..6e37589e 100755 --- a/c302/__init__.py +++ b/c302/__init__.py @@ -41,19 +41,6 @@ import collections -try: - from owmeta_core import __version__ as owc_version - from owmeta_core.bundle import Bundle - from owmeta_core.context import Context - from owmeta import __version__ as owmeta_version - from owmeta.cell import Cell - from owmeta.neuron import Neuron - from owmeta.muscle import Muscle - - owmeta_installed = True -except: - print("owmeta not installed! Proceeding anyway...") - owmeta_installed = False try: from urllib2 import URLError # Python 2 @@ -108,7 +95,7 @@ def get_str_from_expnotation(num): def get_muscle_position(muscle, data_reader="SpreadsheetDataReader"): if muscle == "MANAL" or muscle == "MVULVA": return 0, 0, 0 - # TODO: Pull these positions from openworm/owmeta-data + pat1 = r"M([VD])([LR])(\d+)" pat2 = r"([VD])([LR])(\d+)" md = re.fullmatch(pat1, muscle) @@ -512,24 +499,24 @@ def elem_in_coll_matches_conn(coll, conn): cached_owmeta_data = None -def _get_cell_info(bnd, cells): +def _get_cell_info(cells): global cached_owmeta_data # print('------ Getting the cell info for %s'%cells) all_neuron_info = collections.OrderedDict() all_muscle_info = collections.OrderedDict() - if bnd is None: - if cached_owmeta_data == None: - print_("Loading owmeta cached data from: %s" % OWMETA_CACHED_DATA_FILE) - with open(OWMETA_CACHED_DATA_FILE) as f: - cached_owmeta_data = json.load(f) + if cached_owmeta_data == None: + print_("Loading owmeta cached data from: %s" % OWMETA_CACHED_DATA_FILE) + with open(OWMETA_CACHED_DATA_FILE) as f: + cached_owmeta_data = json.load(f) - for cell in cells: - if is_muscle(cell): - all_muscle_info[cell] = cached_owmeta_data["muscle_info"][cell] - else: - all_neuron_info[cell] = cached_owmeta_data["neuron_info"][cell] + for cell in cells: + if is_muscle(cell): + all_muscle_info[cell] = cached_owmeta_data["muscle_info"][cell] + else: + all_neuron_info[cell] = cached_owmeta_data["neuron_info"][cell] + ''' else: ctx = bnd(Context)(ident="http://openworm.org/data").stored # Go through our list and get the neuron object associated with each name. @@ -590,6 +577,7 @@ def _get_cell_info(bnd, cells): all_muscle_info[cell.name()] = info elif isinstance(cell, Neuron): all_neuron_info[cell.name()] = info + ''' # print('==== Returning %s; %s'%(all_neuron_info, all_muscle_info)) return all_neuron_info, all_muscle_info @@ -705,10 +693,6 @@ def generate( "\n\nParameters and setting used to generate this network:\n\n" + " Data reader: %s\n" % data_reader + " c302 version: %s\n" % __version__ - + " owmeta version: %s\n" - % ("- not installed -" if not owmeta_installed else owmeta_version) - + " owmeta_core version: %s\n" - % ("- not installed -" if not owmeta_installed else owc_version) + " Cells: %s\n" % (cells if cells is not None else "All cells") + " Cell stimulated: %s\n" @@ -843,12 +827,7 @@ def generate( count = 0 - try: - with Bundle("openworm/owmeta-data", version=6) as bnd: - all_neuron_info, all_muscle_info = _get_cell_info(bnd, set(cell_names)) - except Exception as e: - print_('Unable to open "openworm/owmeta-data" bundle: %s' % e) - all_neuron_info, all_muscle_info = _get_cell_info(None, set(cell_names)) + all_neuron_info, all_muscle_info = _get_cell_info(set(cell_names)) for cell in cell_names: if cells is None or cell in cells: diff --git a/c302/__version__.py b/c302/__version__.py index 8088f751..3e2f46a3 100644 --- a/c302/__version__.py +++ b/c302/__version__.py @@ -1 +1 @@ -__version__ = "0.8.1" +__version__ = "0.9.0" diff --git a/c302/backers.py b/c302/backers.py index 1e6676e2..e2ce41f0 100644 --- a/c302/backers.py +++ b/c302/backers.py @@ -1,7 +1,7 @@ """ This method reads a generated list of cells vs. names as assigned by OpenWorm backers - This information will eventually be moved to owmeta/elsewhere... + This information will eventually be moved elsewhere... """ import os diff --git a/c302/bioparameters.py b/c302/bioparameters.py index 474bbc88..115cb1ff 100644 --- a/c302/bioparameters.py +++ b/c302/bioparameters.py @@ -3,7 +3,7 @@ from neuroml import ExpTwoSynapse, GapJunction, GradedSynapse """ - Subject to much change & refactoring once owmeta is stable... + Subject to much change & refactoring... """ diff --git a/c302/c302_info.py b/c302/c302_info.py index 86f5a075..54e7e5fc 100644 --- a/c302/c302_info.py +++ b/c302/c302_info.py @@ -52,27 +52,7 @@ def generate_c302_info(nml_doc, verbose=False): all_cells = sorted(all_cells) - try: - from PyOpenWorm import ( - connect as pyow_connect, - __version__ as pyow_version, - ConnectionFailError, - ) - - pow_conn = pyow_connect("./pyopenworm.conf") - all_neuron_info, all_muscle_info = c302._get_cell_info(pow_conn, all_cells) - ver_info = "PyOpenWorm v%s" % pyow_version - except Exception as e: - c302.print_("Unable to connect to PyOpenWorm database: %s" % e) - from owmeta_core.bundle import Bundle - - from owmeta_core import __version__ as owc_version - from owmeta import __version__ as owmeta_version - - ver_info = "owmeta v%s (owmeta core v%s)" % (owmeta_version, owc_version) - - with Bundle("openworm/owmeta-data", version=6) as bnd: - all_neuron_info, all_muscle_info = c302._get_cell_info(bnd, all_cells) + all_neuron_info, all_muscle_info = c302._get_cell_info(all_cells) all_neurons = [] all_muscles = [] diff --git a/c302/c302_utils.py b/c302/c302_utils.py index bdc9a4db..d50b1927 100644 --- a/c302/c302_utils.py +++ b/c302/c302_utils.py @@ -516,17 +516,7 @@ def generate_conn_matrix( else: all_neurons.append(c) - try: - from owmeta_core.bundle import Bundle - - with Bundle("openworm/owmeta-data", version=6) as bnd: - all_neuron_info, all_muscle_info = c302._get_cell_info(bnd, all_cells) - except Exception as e: - traceback.print_exc() - c302.print_( - "Unable to connect to the owmeta bundle: %s\n Proceeding anyway..." % e - ) - all_neuron_info, all_muscle_info = c302._get_cell_info(None, all_cells) + all_neuron_info, all_muscle_info = c302._get_cell_info(all_cells) """ if order_by_type: diff --git a/examples/LEMS_c302_A_Full.xml b/examples/LEMS_c302_A_Full.xml index 4c04c408..3026285c 100644 --- a/examples/LEMS_c302_A_Full.xml +++ b/examples/LEMS_c302_A_Full.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_A_IClamp.xml b/examples/LEMS_c302_A_IClamp.xml index ce089f65..b9f0c773 100644 --- a/examples/LEMS_c302_A_IClamp.xml +++ b/examples/LEMS_c302_A_IClamp.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_A_Muscles.xml b/examples/LEMS_c302_A_Muscles.xml index 35876b5a..098ef8ea 100644 --- a/examples/LEMS_c302_A_Muscles.xml +++ b/examples/LEMS_c302_A_Muscles.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_A_Oscillator.xml b/examples/LEMS_c302_A_Oscillator.xml index f49d8c52..b9d41914 100644 --- a/examples/LEMS_c302_A_Oscillator.xml +++ b/examples/LEMS_c302_A_Oscillator.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_A_Pharyngeal.xml b/examples/LEMS_c302_A_Pharyngeal.xml index 52b4ce85..0e51501d 100644 --- a/examples/LEMS_c302_A_Pharyngeal.xml +++ b/examples/LEMS_c302_A_Pharyngeal.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_A_Social.xml b/examples/LEMS_c302_A_Social.xml index b06f72fe..449cea37 100644 --- a/examples/LEMS_c302_A_Social.xml +++ b/examples/LEMS_c302_A_Social.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_A_Syns.xml b/examples/LEMS_c302_A_Syns.xml index e40da337..03c575f8 100644 --- a/examples/LEMS_c302_A_Syns.xml +++ b/examples/LEMS_c302_A_Syns.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_B_Full.xml b/examples/LEMS_c302_B_Full.xml index 3d02edc1..b263628d 100644 --- a/examples/LEMS_c302_B_Full.xml +++ b/examples/LEMS_c302_B_Full.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_B_IClamp.xml b/examples/LEMS_c302_B_IClamp.xml index 84112fdd..4f93dd8b 100644 --- a/examples/LEMS_c302_B_IClamp.xml +++ b/examples/LEMS_c302_B_IClamp.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_B_Muscles.xml b/examples/LEMS_c302_B_Muscles.xml index bee930d5..059227c1 100644 --- a/examples/LEMS_c302_B_Muscles.xml +++ b/examples/LEMS_c302_B_Muscles.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_B_Oscillator.xml b/examples/LEMS_c302_B_Oscillator.xml index 5a86a2d2..1d668b35 100644 --- a/examples/LEMS_c302_B_Oscillator.xml +++ b/examples/LEMS_c302_B_Oscillator.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_B_Pharyngeal.xml b/examples/LEMS_c302_B_Pharyngeal.xml index 03f92387..70e49ff4 100644 --- a/examples/LEMS_c302_B_Pharyngeal.xml +++ b/examples/LEMS_c302_B_Pharyngeal.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_B_Social.xml b/examples/LEMS_c302_B_Social.xml index b497c768..6c6c397e 100644 --- a/examples/LEMS_c302_B_Social.xml +++ b/examples/LEMS_c302_B_Social.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_B_Syns.xml b/examples/LEMS_c302_B_Syns.xml index a5def0d9..5e720dd1 100644 --- a/examples/LEMS_c302_B_Syns.xml +++ b/examples/LEMS_c302_B_Syns.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C0_Full.xml b/examples/LEMS_c302_C0_Full.xml index 2b919ffa..89e517dc 100644 --- a/examples/LEMS_c302_C0_Full.xml +++ b/examples/LEMS_c302_C0_Full.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_C0_IClamp.xml b/examples/LEMS_c302_C0_IClamp.xml index 6fc753f9..24a11903 100644 --- a/examples/LEMS_c302_C0_IClamp.xml +++ b/examples/LEMS_c302_C0_IClamp.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C0_Muscles.xml b/examples/LEMS_c302_C0_Muscles.xml index b420b0fe..c0745772 100644 --- a/examples/LEMS_c302_C0_Muscles.xml +++ b/examples/LEMS_c302_C0_Muscles.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C0_Oscillator.xml b/examples/LEMS_c302_C0_Oscillator.xml index 937deb48..b926c6d5 100644 --- a/examples/LEMS_c302_C0_Oscillator.xml +++ b/examples/LEMS_c302_C0_Oscillator.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C0_Pharyngeal.xml b/examples/LEMS_c302_C0_Pharyngeal.xml index 6c4a4f44..417f4ffc 100644 --- a/examples/LEMS_c302_C0_Pharyngeal.xml +++ b/examples/LEMS_c302_C0_Pharyngeal.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_C0_Social.xml b/examples/LEMS_c302_C0_Social.xml index a74b503d..040d6848 100644 --- a/examples/LEMS_c302_C0_Social.xml +++ b/examples/LEMS_c302_C0_Social.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C0_Syns.xml b/examples/LEMS_c302_C0_Syns.xml index f32659d7..db0dc0d7 100644 --- a/examples/LEMS_c302_C0_Syns.xml +++ b/examples/LEMS_c302_C0_Syns.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C1_Full.xml b/examples/LEMS_c302_C1_Full.xml index fbfa833c..76a6819f 100644 --- a/examples/LEMS_c302_C1_Full.xml +++ b/examples/LEMS_c302_C1_Full.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_C1_IClamp.xml b/examples/LEMS_c302_C1_IClamp.xml index ce42b434..f41c8bf8 100644 --- a/examples/LEMS_c302_C1_IClamp.xml +++ b/examples/LEMS_c302_C1_IClamp.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C1_Muscles.xml b/examples/LEMS_c302_C1_Muscles.xml index ce9caa1b..937d2f27 100644 --- a/examples/LEMS_c302_C1_Muscles.xml +++ b/examples/LEMS_c302_C1_Muscles.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C1_Oscillator.xml b/examples/LEMS_c302_C1_Oscillator.xml index 06d2e0e0..934b738d 100644 --- a/examples/LEMS_c302_C1_Oscillator.xml +++ b/examples/LEMS_c302_C1_Oscillator.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C1_Pharyngeal.xml b/examples/LEMS_c302_C1_Pharyngeal.xml index 1011e3df..c048fc9a 100644 --- a/examples/LEMS_c302_C1_Pharyngeal.xml +++ b/examples/LEMS_c302_C1_Pharyngeal.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_C1_Social.xml b/examples/LEMS_c302_C1_Social.xml index 925b0f5a..c7c91818 100644 --- a/examples/LEMS_c302_C1_Social.xml +++ b/examples/LEMS_c302_C1_Social.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C1_Syns.xml b/examples/LEMS_c302_C1_Syns.xml index 179f7450..ec349d54 100644 --- a/examples/LEMS_c302_C1_Syns.xml +++ b/examples/LEMS_c302_C1_Syns.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C2_FW.xml b/examples/LEMS_c302_C2_FW.xml index a9887f0c..9121ebe1 100644 --- a/examples/LEMS_c302_C2_FW.xml +++ b/examples/LEMS_c302_C2_FW.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: UpdatedSpreadsheetDataReader2 - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AVBL', 'AVBR', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'VD1', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'VD10', 'VD11', 'VD12', 'VD13', 'VB1', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VB10', 'VB11', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C2_Full.xml b/examples/LEMS_c302_C2_Full.xml index d468c708..efac625f 100644 --- a/examples/LEMS_c302_C2_Full.xml +++ b/examples/LEMS_c302_C2_Full.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_C2_IClamp.xml b/examples/LEMS_c302_C2_IClamp.xml index 953704d1..0a92eca8 100644 --- a/examples/LEMS_c302_C2_IClamp.xml +++ b/examples/LEMS_c302_C2_IClamp.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C2_Muscles.xml b/examples/LEMS_c302_C2_Muscles.xml index aa93b134..ceff0d11 100644 --- a/examples/LEMS_c302_C2_Muscles.xml +++ b/examples/LEMS_c302_C2_Muscles.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C2_Oscillator.xml b/examples/LEMS_c302_C2_Oscillator.xml index 4d0b336a..43f58ebf 100644 --- a/examples/LEMS_c302_C2_Oscillator.xml +++ b/examples/LEMS_c302_C2_Oscillator.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C2_Pharyngeal.xml b/examples/LEMS_c302_C2_Pharyngeal.xml index 03fe1915..6b8ce95c 100644 --- a/examples/LEMS_c302_C2_Pharyngeal.xml +++ b/examples/LEMS_c302_C2_Pharyngeal.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_C2_Social.xml b/examples/LEMS_c302_C2_Social.xml index 5e1b62ce..ce350a83 100644 --- a/examples/LEMS_c302_C2_Social.xml +++ b/examples/LEMS_c302_C2_Social.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C2_Syns.xml b/examples/LEMS_c302_C2_Syns.xml index d571ffc7..6dbd7247 100644 --- a/examples/LEMS_c302_C2_Syns.xml +++ b/examples/LEMS_c302_C2_Syns.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C_Full.xml b/examples/LEMS_c302_C_Full.xml index 5c844f02..e0eb4adc 100644 --- a/examples/LEMS_c302_C_Full.xml +++ b/examples/LEMS_c302_C_Full.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_C_IClamp.xml b/examples/LEMS_c302_C_IClamp.xml index 2707f2b8..63fc2327 100644 --- a/examples/LEMS_c302_C_IClamp.xml +++ b/examples/LEMS_c302_C_IClamp.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C_Muscles.xml b/examples/LEMS_c302_C_Muscles.xml index 4da1f31f..19b968f7 100644 --- a/examples/LEMS_c302_C_Muscles.xml +++ b/examples/LEMS_c302_C_Muscles.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C_Oscillator.xml b/examples/LEMS_c302_C_Oscillator.xml index 33b2c811..9ad3154b 100644 --- a/examples/LEMS_c302_C_Oscillator.xml +++ b/examples/LEMS_c302_C_Oscillator.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_C_Pharyngeal.xml b/examples/LEMS_c302_C_Pharyngeal.xml index b1626106..c4ac1b29 100644 --- a/examples/LEMS_c302_C_Pharyngeal.xml +++ b/examples/LEMS_c302_C_Pharyngeal.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_C_Social.xml b/examples/LEMS_c302_C_Social.xml index 093d2f0a..e854716c 100644 --- a/examples/LEMS_c302_C_Social.xml +++ b/examples/LEMS_c302_C_Social.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_C_Syns.xml b/examples/LEMS_c302_C_Syns.xml index 3f0bdc8c..1f26e37d 100644 --- a/examples/LEMS_c302_C_Syns.xml +++ b/examples/LEMS_c302_C_Syns.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D1_Full.xml b/examples/LEMS_c302_D1_Full.xml index 0160c9ff..3a85f554 100644 --- a/examples/LEMS_c302_D1_Full.xml +++ b/examples/LEMS_c302_D1_Full.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_D1_IClamp.xml b/examples/LEMS_c302_D1_IClamp.xml index ec847c6a..72b2f53d 100644 --- a/examples/LEMS_c302_D1_IClamp.xml +++ b/examples/LEMS_c302_D1_IClamp.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D1_Muscles.xml b/examples/LEMS_c302_D1_Muscles.xml index 6c7b7ce3..65cd5964 100644 --- a/examples/LEMS_c302_D1_Muscles.xml +++ b/examples/LEMS_c302_D1_Muscles.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_D1_Oscillator.xml b/examples/LEMS_c302_D1_Oscillator.xml index 25b3d5e0..cfa0a9f1 100644 --- a/examples/LEMS_c302_D1_Oscillator.xml +++ b/examples/LEMS_c302_D1_Oscillator.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_D1_Pharyngeal.xml b/examples/LEMS_c302_D1_Pharyngeal.xml index 32473d40..c4cac5d9 100644 --- a/examples/LEMS_c302_D1_Pharyngeal.xml +++ b/examples/LEMS_c302_D1_Pharyngeal.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_D1_Social.xml b/examples/LEMS_c302_D1_Social.xml index c38af0ff..8d7eac14 100644 --- a/examples/LEMS_c302_D1_Social.xml +++ b/examples/LEMS_c302_D1_Social.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D1_Syns.xml b/examples/LEMS_c302_D1_Syns.xml index 69ef7e56..018e573b 100644 --- a/examples/LEMS_c302_D1_Syns.xml +++ b/examples/LEMS_c302_D1_Syns.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D_Full.xml b/examples/LEMS_c302_D_Full.xml index 67956719..6f687a43 100644 --- a/examples/LEMS_c302_D_Full.xml +++ b/examples/LEMS_c302_D_Full.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/LEMS_c302_D_IClamp.xml b/examples/LEMS_c302_D_IClamp.xml index afbd86c8..60584d92 100644 --- a/examples/LEMS_c302_D_IClamp.xml +++ b/examples/LEMS_c302_D_IClamp.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D_Muscles.xml b/examples/LEMS_c302_D_Muscles.xml index 69decd74..142da6de 100644 --- a/examples/LEMS_c302_D_Muscles.xml +++ b/examples/LEMS_c302_D_Muscles.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_D_Oscillator.xml b/examples/LEMS_c302_D_Oscillator.xml index 9f2d9dcd..a35d468e 100644 --- a/examples/LEMS_c302_D_Oscillator.xml +++ b/examples/LEMS_c302_D_Oscillator.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/LEMS_c302_D_Pharyngeal.xml b/examples/LEMS_c302_D_Pharyngeal.xml index c8eaf6d6..54bff000 100644 --- a/examples/LEMS_c302_D_Pharyngeal.xml +++ b/examples/LEMS_c302_D_Pharyngeal.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/LEMS_c302_D_Social.xml b/examples/LEMS_c302_D_Social.xml index 51c7c058..a40268f4 100644 --- a/examples/LEMS_c302_D_Social.xml +++ b/examples/LEMS_c302_D_Social.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/LEMS_c302_D_Syns.xml b/examples/LEMS_c302_D_Syns.xml index 15f079be..377c1f2c 100644 --- a/examples/LEMS_c302_D_Syns.xml +++ b/examples/LEMS_c302_D_Syns.xml @@ -6,9 +6,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_A_Full.net.nml b/examples/c302_A_Full.net.nml index 28e15dc4..0ab24222 100644 --- a/examples/c302_A_Full.net.nml +++ b/examples/c302_A_Full.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_A_IClamp.net.nml b/examples/c302_A_IClamp.net.nml index 4773afce..add89a9b 100644 --- a/examples/c302_A_IClamp.net.nml +++ b/examples/c302_A_IClamp.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_A_Muscles.net.nml b/examples/c302_A_Muscles.net.nml index 2aca92e6..1dd25598 100644 --- a/examples/c302_A_Muscles.net.nml +++ b/examples/c302_A_Muscles.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_A_Oscillator.net.nml b/examples/c302_A_Oscillator.net.nml index 71fde6e2..0f7440ae 100644 --- a/examples/c302_A_Oscillator.net.nml +++ b/examples/c302_A_Oscillator.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_A_Pharyngeal.net.nml b/examples/c302_A_Pharyngeal.net.nml index cfd2f229..358bff31 100644 --- a/examples/c302_A_Pharyngeal.net.nml +++ b/examples/c302_A_Pharyngeal.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_A_Social.net.nml b/examples/c302_A_Social.net.nml index 3f02e0f1..6729fd4f 100644 --- a/examples/c302_A_Social.net.nml +++ b/examples/c302_A_Social.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_A_Syns.net.nml b/examples/c302_A_Syns.net.nml index 0fe54094..c141e9ec 100644 --- a/examples/c302_A_Syns.net.nml +++ b/examples/c302_A_Syns.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_B_Full.net.nml b/examples/c302_B_Full.net.nml index 08e25f21..c4174a5e 100644 --- a/examples/c302_B_Full.net.nml +++ b/examples/c302_B_Full.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_B_IClamp.net.nml b/examples/c302_B_IClamp.net.nml index 3f36c85f..9bf8fc46 100644 --- a/examples/c302_B_IClamp.net.nml +++ b/examples/c302_B_IClamp.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_B_Muscles.net.nml b/examples/c302_B_Muscles.net.nml index bc95e340..f1e2cefd 100644 --- a/examples/c302_B_Muscles.net.nml +++ b/examples/c302_B_Muscles.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_B_Oscillator.net.nml b/examples/c302_B_Oscillator.net.nml index c8aa599c..f45a81b2 100644 --- a/examples/c302_B_Oscillator.net.nml +++ b/examples/c302_B_Oscillator.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_B_Pharyngeal.net.nml b/examples/c302_B_Pharyngeal.net.nml index 3e4e7691..bfedec0c 100644 --- a/examples/c302_B_Pharyngeal.net.nml +++ b/examples/c302_B_Pharyngeal.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_B_Social.net.nml b/examples/c302_B_Social.net.nml index cb30ebbd..d7f79396 100644 --- a/examples/c302_B_Social.net.nml +++ b/examples/c302_B_Social.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_B_Syns.net.nml b/examples/c302_B_Syns.net.nml index f699d1da..90846fd7 100644 --- a/examples/c302_B_Syns.net.nml +++ b/examples/c302_B_Syns.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C0_Full.net.nml b/examples/c302_C0_Full.net.nml index 3c332841..e82328b3 100644 --- a/examples/c302_C0_Full.net.nml +++ b/examples/c302_C0_Full.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_C0_IClamp.net.nml b/examples/c302_C0_IClamp.net.nml index 28e6793d..196de965 100644 --- a/examples/c302_C0_IClamp.net.nml +++ b/examples/c302_C0_IClamp.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C0_Muscles.net.nml b/examples/c302_C0_Muscles.net.nml index 08f941da..9e376034 100644 --- a/examples/c302_C0_Muscles.net.nml +++ b/examples/c302_C0_Muscles.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C0_Oscillator.net.nml b/examples/c302_C0_Oscillator.net.nml index 38a10a4b..a2ffb739 100644 --- a/examples/c302_C0_Oscillator.net.nml +++ b/examples/c302_C0_Oscillator.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C0_Pharyngeal.net.nml b/examples/c302_C0_Pharyngeal.net.nml index c1a8329f..d39a4893 100644 --- a/examples/c302_C0_Pharyngeal.net.nml +++ b/examples/c302_C0_Pharyngeal.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_C0_Social.net.nml b/examples/c302_C0_Social.net.nml index 9c26bade..9d28479d 100644 --- a/examples/c302_C0_Social.net.nml +++ b/examples/c302_C0_Social.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C0_Syns.net.nml b/examples/c302_C0_Syns.net.nml index 56cccab1..d515abf6 100644 --- a/examples/c302_C0_Syns.net.nml +++ b/examples/c302_C0_Syns.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C1_Full.net.nml b/examples/c302_C1_Full.net.nml index 423cf198..a72f9c9a 100644 --- a/examples/c302_C1_Full.net.nml +++ b/examples/c302_C1_Full.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_C1_IClamp.net.nml b/examples/c302_C1_IClamp.net.nml index a908d29f..91f8b0c5 100644 --- a/examples/c302_C1_IClamp.net.nml +++ b/examples/c302_C1_IClamp.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C1_Muscles.net.nml b/examples/c302_C1_Muscles.net.nml index a3d164bc..95f5a997 100644 --- a/examples/c302_C1_Muscles.net.nml +++ b/examples/c302_C1_Muscles.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C1_Oscillator.net.nml b/examples/c302_C1_Oscillator.net.nml index 99e3d648..8951c48e 100644 --- a/examples/c302_C1_Oscillator.net.nml +++ b/examples/c302_C1_Oscillator.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C1_Pharyngeal.net.nml b/examples/c302_C1_Pharyngeal.net.nml index 178c624f..77cb619e 100644 --- a/examples/c302_C1_Pharyngeal.net.nml +++ b/examples/c302_C1_Pharyngeal.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_C1_Social.net.nml b/examples/c302_C1_Social.net.nml index 968d6ae9..7ea37b28 100644 --- a/examples/c302_C1_Social.net.nml +++ b/examples/c302_C1_Social.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C1_Syns.net.nml b/examples/c302_C1_Syns.net.nml index 8fff8272..a5288015 100644 --- a/examples/c302_C1_Syns.net.nml +++ b/examples/c302_C1_Syns.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C2_FW.net.nml b/examples/c302_C2_FW.net.nml index 39bf6076..13e91fae 100644 --- a/examples/c302_C2_FW.net.nml +++ b/examples/c302_C2_FW.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: UpdatedSpreadsheetDataReader2 - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AVBL', 'AVBR', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'VD1', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'VD10', 'VD11', 'VD12', 'VD13', 'VB1', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VB10', 'VB11', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C2_Full.net.nml b/examples/c302_C2_Full.net.nml index c585372e..d09f1609 100644 --- a/examples/c302_C2_Full.net.nml +++ b/examples/c302_C2_Full.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_C2_IClamp.net.nml b/examples/c302_C2_IClamp.net.nml index 71e9d0d4..762ee132 100644 --- a/examples/c302_C2_IClamp.net.nml +++ b/examples/c302_C2_IClamp.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C2_Muscles.net.nml b/examples/c302_C2_Muscles.net.nml index ac8886c5..bfb64a95 100644 --- a/examples/c302_C2_Muscles.net.nml +++ b/examples/c302_C2_Muscles.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C2_Oscillator.net.nml b/examples/c302_C2_Oscillator.net.nml index 9c27e322..fc15f320 100644 --- a/examples/c302_C2_Oscillator.net.nml +++ b/examples/c302_C2_Oscillator.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C2_Pharyngeal.net.nml b/examples/c302_C2_Pharyngeal.net.nml index 9de6e5f2..883847cb 100644 --- a/examples/c302_C2_Pharyngeal.net.nml +++ b/examples/c302_C2_Pharyngeal.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_C2_Social.net.nml b/examples/c302_C2_Social.net.nml index a0a95e3d..6f98eb69 100644 --- a/examples/c302_C2_Social.net.nml +++ b/examples/c302_C2_Social.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C2_Syns.net.nml b/examples/c302_C2_Syns.net.nml index d1954cea..e780af0f 100644 --- a/examples/c302_C2_Syns.net.nml +++ b/examples/c302_C2_Syns.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C_Full.net.nml b/examples/c302_C_Full.net.nml index ebd4569b..8b031536 100644 --- a/examples/c302_C_Full.net.nml +++ b/examples/c302_C_Full.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_C_IClamp.net.nml b/examples/c302_C_IClamp.net.nml index 152cd78b..acb55bc8 100644 --- a/examples/c302_C_IClamp.net.nml +++ b/examples/c302_C_IClamp.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C_Muscles.net.nml b/examples/c302_C_Muscles.net.nml index ee053c40..45acdfdb 100644 --- a/examples/c302_C_Muscles.net.nml +++ b/examples/c302_C_Muscles.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C_Oscillator.net.nml b/examples/c302_C_Oscillator.net.nml index 726f244f..50e8aaba 100644 --- a/examples/c302_C_Oscillator.net.nml +++ b/examples/c302_C_Oscillator.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_C_Pharyngeal.net.nml b/examples/c302_C_Pharyngeal.net.nml index baf2a88e..12b1f1a3 100644 --- a/examples/c302_C_Pharyngeal.net.nml +++ b/examples/c302_C_Pharyngeal.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_C_Social.net.nml b/examples/c302_C_Social.net.nml index 9d988755..816ef2a6 100644 --- a/examples/c302_C_Social.net.nml +++ b/examples/c302_C_Social.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_C_Syns.net.nml b/examples/c302_C_Syns.net.nml index 80798f71..7e259de0 100644 --- a/examples/c302_C_Syns.net.nml +++ b/examples/c302_C_Syns.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D1_Full.net.nml b/examples/c302_D1_Full.net.nml index e14b676c..b0f95bf1 100644 --- a/examples/c302_D1_Full.net.nml +++ b/examples/c302_D1_Full.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_D1_IClamp.net.nml b/examples/c302_D1_IClamp.net.nml index 865f6446..755f11a8 100644 --- a/examples/c302_D1_IClamp.net.nml +++ b/examples/c302_D1_IClamp.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D1_Muscles.net.nml b/examples/c302_D1_Muscles.net.nml index fd29eadd..e741f2f8 100644 --- a/examples/c302_D1_Muscles.net.nml +++ b/examples/c302_D1_Muscles.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_D1_Oscillator.net.nml b/examples/c302_D1_Oscillator.net.nml index e8186aaf..5c67012f 100644 --- a/examples/c302_D1_Oscillator.net.nml +++ b/examples/c302_D1_Oscillator.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_D1_Pharyngeal.net.nml b/examples/c302_D1_Pharyngeal.net.nml index b8ee1b80..191bec5d 100644 --- a/examples/c302_D1_Pharyngeal.net.nml +++ b/examples/c302_D1_Pharyngeal.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_D1_Social.net.nml b/examples/c302_D1_Social.net.nml index 0debb627..0d250f09 100644 --- a/examples/c302_D1_Social.net.nml +++ b/examples/c302_D1_Social.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D1_Syns.net.nml b/examples/c302_D1_Syns.net.nml index c112e669..cba9a77c 100644 --- a/examples/c302_D1_Syns.net.nml +++ b/examples/c302_D1_Syns.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D_Full.net.nml b/examples/c302_D_Full.net.nml index b5e4738d..da5f2533 100644 --- a/examples/c302_D_Full.net.nml +++ b/examples/c302_D_Full.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: All cells Cell stimulated: ['PLML', 'PLMR'] Connection: [] diff --git a/examples/c302_D_IClamp.net.nml b/examples/c302_D_IClamp.net.nml index a3366e8f..c31b9978 100644 --- a/examples/c302_D_IClamp.net.nml +++ b/examples/c302_D_IClamp.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['ADAL', 'PVCL'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D_Muscles.net.nml b/examples/c302_D_Muscles.net.nml index 2c7e0b60..34dbd29a 100644 --- a/examples/c302_D_Muscles.net.nml +++ b/examples/c302_D_Muscles.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_D_Oscillator.net.nml b/examples/c302_D_Oscillator.net.nml index 6628b7bb..6a33c490 100644 --- a/examples/c302_D_Oscillator.net.nml +++ b/examples/c302_D_Oscillator.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR'] Cell stimulated: ['AVBL', 'AVBR'] Connection: [] diff --git a/examples/c302_D_Pharyngeal.net.nml b/examples/c302_D_Pharyngeal.net.nml index 691b2bc5..8d35ec3c 100644 --- a/examples/c302_D_Pharyngeal.net.nml +++ b/examples/c302_D_Pharyngeal.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR'] Cell stimulated: ['M1', 'M3R', 'M4', 'M5', 'I1L', 'I4', 'I5', 'I6', 'MCL', 'MCR'] Connection: [] diff --git a/examples/c302_D_Social.net.nml b/examples/c302_D_Social.net.nml index 4619d8dc..38cfea06 100644 --- a/examples/c302_D_Social.net.nml +++ b/examples/c302_D_Social.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR'] Cell stimulated: [] Connection: [] diff --git a/examples/c302_D_Syns.net.nml b/examples/c302_D_Syns.net.nml index 22a66be1..37a0c98e 100644 --- a/examples/c302_D_Syns.net.nml +++ b/examples/c302_D_Syns.net.nml @@ -4,9 +4,7 @@ Parameters and setting used to generate this network: Data reader: SpreadsheetDataReader - c302 version: 0.8.0 - owmeta version: 0.12.3 - owmeta_core version: 0.13.5 + c302 version: 0.9.0 Cells: ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL'] Cell stimulated: [] Connection: []