From 1777e6f00c4b3c447caff33822812dd1140aa457 Mon Sep 17 00:00:00 2001
From: pgleeson
Date: Tue, 14 Jan 2025 10:02:24 +0000
Subject: [PATCH 1/7] More ruff inspired fixes
---
c302/CompareMain.py | 13 +++++++------
c302/NeuroMLUtilities.py | 2 +-
c302/OpenWormReader.py | 6 +++---
c302/SpreadsheetDataReader.py | 2 +-
c302/__init__.py | 17 ++++++++++++-----
c302/analyse.py | 1 -
c302/c302_FW.py | 11 ++++++++---
c302/c302_Full.py | 7 ++++++-
c302/c302_IClamp.py | 9 +++++++--
c302/c302_IClampMuscle.py | 7 ++++++-
c302/c302_MultiSyns.py | 12 ++++++++----
c302/c302_MuscleTest.py | 13 +++++++++----
c302/c302_Muscles.py | 7 ++++++-
c302/c302_MusclesSine.py | 6 +++++-
c302/c302_Oscillator.py | 6 +++++-
c302/c302_OscillatorM.py | 6 +++++-
c302/c302_Pharyngeal.py | 6 +++++-
c302/c302_RIA.py | 6 +++++-
c302/c302_Social.py | 6 +++++-
c302/c302_Syns.py | 6 +++++-
c302/c302_TapWithdrawal.py | 10 +++++++---
c302/c302_TargetMuscle.py | 7 ++++++-
c302/c302_utils.py | 9 ++++-----
c302/parameters_C2.py | 6 +++---
24 files changed, 129 insertions(+), 52 deletions(-)
diff --git a/c302/CompareMain.py b/c302/CompareMain.py
index bac3fce9..5a38a06e 100644
--- a/c302/CompareMain.py
+++ b/c302/CompareMain.py
@@ -118,13 +118,13 @@ def getColumnsXls(fileIn):
# print(indexName[c])
while curr_row < num_rows:
curr_row += 1
- row = worksheet.row(curr_row)
+ # row = worksheet.row(curr_row)
# print('Row:', curr_row)
curr_cell = -1
while curr_cell < num_cells:
curr_cell += 1
# Cell Types: 0=Empty, 1=Text, 2=Number, 3=Date, 4=Boolean, 5=Error, 6=Blank
- cell_type = worksheet.cell_type(curr_row, curr_cell)
+ # cell_type = worksheet.cell_type(curr_row, curr_cell)
cell_value = str(worksheet.cell_value(curr_row, curr_cell))
# print(' ', cell_type, ':', cell_value)
cols[indexName[curr_cell]] += [cell_value]
@@ -256,10 +256,11 @@ def matchLists(cols1, cols2, indexName1, indexName2):
# 'R', 'Rp', 'S', 'Sp' map to 'Send'.
# 'NMJ' does not map.
def typeMapping(cols1, cols2, indexName1, indexName2):
- list1 = ["GapJunction", "Send"]
- list2 = ["EJ", "NMJ", "R", "Rp", "S", "Sp"]
- type1 = cols1[indexName1[2]]
- type2 = cols2[indexName2[2]]
+ # list1 = ["GapJunction", "Send"]
+ # list2 = ["EJ", "NMJ", "R", "Rp", "S", "Sp"]
+ # type1 = cols1[indexName1[2]]
+ # type2 = cols2[indexName2[2]]
+ pass
if __name__ == "__main__":
diff --git a/c302/NeuroMLUtilities.py b/c302/NeuroMLUtilities.py
index 37db9aa7..ed31fae3 100644
--- a/c302/NeuroMLUtilities.py
+++ b/c302/NeuroMLUtilities.py
@@ -43,7 +43,7 @@ def fract(a, b, f):
if __name__ == "__main__":
- from SpreadsheetDataReader import read_data, read_muscle_data
+ # from SpreadsheetDataReader import read_data, read_muscle_data
from WormNeuroAtlasReader import read_data, read_muscle_data
cells, neuron_conns = read_data(include_nonconnected_cells=True)
diff --git a/c302/OpenWormReader.py b/c302/OpenWormReader.py
index 933829c3..28f12096 100644
--- a/c302/OpenWormReader.py
+++ b/c302/OpenWormReader.py
@@ -11,7 +11,7 @@
from owmeta.neuron import Neuron
from owmeta.muscle import BodyWallMuscle
from owmeta.worm import Worm
-except:
+except Exception:
print("owmeta not installed! Cannot run OpenWormReader")
exit()
@@ -41,7 +41,7 @@ def read_data(self, include_nonconnected_cells=False):
try:
cell_names, pre, post, conns = self._read_connections("neuron")
- except:
+ except Exception:
print(
"\nProblem loading connections via owmeta! The package is installed however. You may need to try running:"
+ "\n\n owm bundle remote --user add ow 'https://raw.githubusercontent.com/openworm/owmeta-bundles/master/index.json'\n"
@@ -158,7 +158,7 @@ def format_muscle_name(muscle_name):
exit()
conn_map_OWR = {}
- for c in conns:
+ for c in neuron_conns:
conn_map_OWR[c.short().lower()] = c
from c302.UpdatedSpreadsheetDataReader import read_data as read_data_usr
diff --git a/c302/SpreadsheetDataReader.py b/c302/SpreadsheetDataReader.py
index e8c2348c..1af89076 100644
--- a/c302/SpreadsheetDataReader.py
+++ b/c302/SpreadsheetDataReader.py
@@ -12,13 +12,13 @@
from c302.ConnectomeReader import ConnectionInfo
from c302.ConnectomeReader import analyse_connections
+from c302 import print_
from xlrd import open_workbook
import os
spreadsheet_location = os.path.dirname(os.path.abspath(__file__)) + "/data/"
-from c302 import print_
READER_DESCRIPTION = (
"""Data extracted from CElegansNeuronTables.xls for neuronal connectivity"""
diff --git a/c302/__init__.py b/c302/__init__.py
index 4ab74976..83ec8a02 100755
--- a/c302/__init__.py
+++ b/c302/__init__.py
@@ -23,7 +23,7 @@
import neuroml.writers as writers
import neuroml.loaders as loaders
-import c302.bioparameters
+# import c302.bioparameters
import airspeed
@@ -39,6 +39,7 @@
import json
+
import collections
try:
@@ -51,13 +52,14 @@
from owmeta.muscle import Muscle
owmeta_installed = True
-except:
+
+except Exception:
print("owmeta not installed! Proceeding anyway...")
owmeta_installed = False
try:
from urllib2 import URLError # Python 2
-except:
+except Exception:
from urllib.error import URLError # Python 3
logging.basicConfig()
@@ -519,7 +521,7 @@ def _get_cell_info(bnd, cells):
all_muscle_info = collections.OrderedDict()
if bnd is None:
- if cached_owmeta_data == None:
+ if cached_owmeta_data is None:
print_("Loading owmeta cached data from: %s" % OWMETA_CACHED_DATA_FILE)
with open(OWMETA_CACHED_DATA_FILE) as f:
cached_owmeta_data = json.load(f)
@@ -1730,10 +1732,15 @@ def parse_dict_arg(dict_arg):
def main():
+ import importlib
+
print("Starting c302 v%s..." % __version__)
args = process_args()
- exec("from c302.%s import ParameterisedModel" % args.parameters, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.%s" % args.parameters),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
generate(
args.reference,
diff --git a/c302/analyse.py b/c302/analyse.py
index 90fdfd4f..960cf461 100644
--- a/c302/analyse.py
+++ b/c302/analyse.py
@@ -1,6 +1,5 @@
import sys
import matplotlib.pyplot as plt
-from pylab import *
fig = plt.figure(facecolor="#FFFFFF", edgecolor="#FFFFFF")
diff --git a/c302/c302_FW.py b/c302/c302_FW.py
index b6e1aef4..b1128f44 100644
--- a/c302/c302_FW.py
+++ b/c302/c302_FW.py
@@ -1,5 +1,6 @@
import sys
import os
+import importlib
sys.path.insert(0, os.path.abspath("."))
@@ -21,7 +22,10 @@ def setup(
verbose=True,
config_param_overrides={},
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
params.set_bioparameter(
@@ -34,13 +38,14 @@ def setup(
"unphysiological_offset_current_dur", "2000 ms", "Testing TapWithdrawal", "0"
)
+ """
VA_motors = ["VA%s" % c for c in range_incl(1, 12)]
- VB_motors = ["VB%s" % c for c in range_incl(1, 11)]
DA_motors = ["DA%s" % c for c in range_incl(1, 9)]
+ AS_motors = ["AS%s" % c for c in range_incl(1, 11)]"""
+ VB_motors = ["VB%s" % c for c in range_incl(1, 11)]
DB_motors = ["DB%s" % c for c in range_incl(1, 7)]
DD_motors = ["DD%s" % c for c in range_incl(1, 6)]
VD_motors = ["VD%s" % c for c in range_incl(1, 13)]
- AS_motors = ["AS%s" % c for c in range_incl(1, 11)]
cells = list(["AVBL", "AVBR"] + DB_motors + VD_motors + VB_motors + DD_motors)
diff --git a/c302/c302_Full.py b/c302/c302_Full.py
index 4e605321..cac1de50 100644
--- a/c302/c302_Full.py
+++ b/c302/c302_Full.py
@@ -1,6 +1,8 @@
import c302
import sys
+import importlib
+
def setup(
parameter_set,
@@ -14,7 +16,10 @@ def setup(
config_param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
# Some random set of neurons
diff --git a/c302/c302_IClamp.py b/c302/c302_IClamp.py
index b85b5f40..2d62713d 100644
--- a/c302/c302_IClamp.py
+++ b/c302/c302_IClamp.py
@@ -2,6 +2,8 @@
import sys
import neuroml.writers as writers
+import importlib
+
def setup(
parameter_set,
@@ -17,11 +19,14 @@ def setup(
reference = "c302_%s_IClamp" % parameter_set
c302.print_("Setting up %s" % reference)
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
stim_amplitudes = ["1pA", "2pA", "3pA", "4pA", "5pA", "6pA"]
- if duration == None:
+ if duration is None:
duration = (len(stim_amplitudes)) * 1000
my_cells = ["ADAL", "PVCL"]
diff --git a/c302/c302_IClampMuscle.py b/c302/c302_IClampMuscle.py
index f860c8d3..342f2b33 100644
--- a/c302/c302_IClampMuscle.py
+++ b/c302/c302_IClampMuscle.py
@@ -1,6 +1,8 @@
import c302
import sys
+import importlib
+
def setup(
parameter_set,
@@ -12,7 +14,10 @@ def setup(
param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
my_cells = []
diff --git a/c302/c302_MultiSyns.py b/c302/c302_MultiSyns.py
index 676c49ed..c34c7bad 100644
--- a/c302/c302_MultiSyns.py
+++ b/c302/c302_MultiSyns.py
@@ -1,14 +1,18 @@
-from c302 import generate, add_new_input
+from c302 import generate, add_new_input, print_
import neuroml.writers as writers
+import importlib
import sys
if __name__ == "__main__":
parameter_set = sys.argv[1] if len(sys.argv) == 2 else "A"
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
cells = ["URYDL", "SMDDR", "ADAL", "RIML", "IL2VL", "RIPL"]
@@ -26,7 +30,7 @@
duration=1000,
dt=0.1,
target_directory=target_directory,
- verbose=verbose,
+ verbose=True,
)
stim_amplitude = "0.35nA"
@@ -39,4 +43,4 @@
nml_doc, nml_file
) # Write over network file written above...
- c302.print_("(Re)written network file to: " + nml_file)
+ print_("(Re)written network file to: " + nml_file)
diff --git a/c302/c302_MuscleTest.py b/c302/c302_MuscleTest.py
index 559bab90..950cf17e 100644
--- a/c302/c302_MuscleTest.py
+++ b/c302/c302_MuscleTest.py
@@ -1,5 +1,6 @@
import sys
import os
+import importlib
sys.path.insert(0, os.path.abspath("."))
@@ -21,7 +22,10 @@ def setup(
verbose=True,
config_param_overrides={},
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
params.set_bioparameter(
@@ -34,13 +38,14 @@ def setup(
"unphysiological_offset_current_dur", "2000 ms", "Testing TapWithdrawal", "0"
)
+ """
VA_motors = ["VA%s" % c for c in range_incl(1, 12)]
VB_motors = ["VB%s" % c for c in range_incl(1, 11)]
DA_motors = ["DA%s" % c for c in range_incl(1, 9)]
DB_motors = ["DB%s" % c for c in range_incl(1, 7)]
DD_motors = ["DD%s" % c for c in range_incl(1, 6)]
VD_motors = ["VD%s" % c for c in range_incl(1, 13)]
- AS_motors = ["AS%s" % c for c in range_incl(1, 11)]
+ AS_motors = ["AS%s" % c for c in range_incl(1, 11)]"""
cells = []
@@ -75,7 +80,7 @@ def setup(
"ca_conc_rho_muscle": "0.002138919 mol_per_m_per_A_per_s",
}
- end = "%sms" % (int(duration) - 100)
+ # end = "%sms" % (int(duration) - 100)
input_list = []
@@ -174,4 +179,4 @@ def setup(
if len(sys.argv) == 3:
setup_kwargs["data_reader"] = sys.argv[2]
- setup(parameter_set, generate=True, data_reader=data_reader)
+ # setup(parameter_set, generate=True, data_reader=data_reader)
diff --git a/c302/c302_Muscles.py b/c302/c302_Muscles.py
index 829415e9..ee624555 100644
--- a/c302/c302_Muscles.py
+++ b/c302/c302_Muscles.py
@@ -1,6 +1,8 @@
import c302
import sys
+import importlib
+
def setup(
parameter_set,
@@ -13,7 +15,10 @@ def setup(
config_param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
params.set_bioparameter(
diff --git a/c302/c302_MusclesSine.py b/c302/c302_MusclesSine.py
index 14eaa4bf..0a95ce81 100644
--- a/c302/c302_MusclesSine.py
+++ b/c302/c302_MusclesSine.py
@@ -1,5 +1,6 @@
import c302
import sys
+import importlib
def setup(
@@ -13,7 +14,10 @@ def setup(
config_param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
params.set_bioparameter(
diff --git a/c302/c302_Oscillator.py b/c302/c302_Oscillator.py
index d9a228ba..a072ef7d 100644
--- a/c302/c302_Oscillator.py
+++ b/c302/c302_Oscillator.py
@@ -1,5 +1,6 @@
import c302
import sys
+import importlib
def setup(
@@ -13,7 +14,10 @@ def setup(
config_param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
params.set_bioparameter("unphysiological_offset_current", "4pA", "Testing Osc", "0")
diff --git a/c302/c302_OscillatorM.py b/c302/c302_OscillatorM.py
index 0746e939..00189354 100644
--- a/c302/c302_OscillatorM.py
+++ b/c302/c302_OscillatorM.py
@@ -1,5 +1,6 @@
import c302
import sys
+import importlib
def setup(
@@ -13,7 +14,10 @@ def setup(
config_param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
params.set_bioparameter(
diff --git a/c302/c302_Pharyngeal.py b/c302/c302_Pharyngeal.py
index 3a934982..9392de49 100644
--- a/c302/c302_Pharyngeal.py
+++ b/c302/c302_Pharyngeal.py
@@ -1,5 +1,6 @@
import c302
import sys
+import importlib
def setup(
@@ -13,7 +14,10 @@ def setup(
config_param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
params.set_bioparameter(
diff --git a/c302/c302_RIA.py b/c302/c302_RIA.py
index b8709a03..80349871 100644
--- a/c302/c302_RIA.py
+++ b/c302/c302_RIA.py
@@ -1,6 +1,7 @@
import c302
import sys
import neuroml.writers as writers
+import importlib
def setup(
@@ -13,7 +14,10 @@ def setup(
param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
my_cells = ["RIAL", "RIAR", "SMDDL", "SMDVL"]
diff --git a/c302/c302_Social.py b/c302/c302_Social.py
index 554984c8..bd48e250 100644
--- a/c302/c302_Social.py
+++ b/c302/c302_Social.py
@@ -14,6 +14,7 @@
import neuroml.writers as writers
import sys
+import importlib
def setup(
@@ -27,7 +28,10 @@ def setup(
config_param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
cells = ["RMGR", "ASHR", "ASKR", "AWBR", "IL2R", "RMHR", "URXR"]
diff --git a/c302/c302_Syns.py b/c302/c302_Syns.py
index 4f86c54b..befeed8d 100644
--- a/c302/c302_Syns.py
+++ b/c302/c302_Syns.py
@@ -1,6 +1,7 @@
import c302
import sys
import neuroml.writers as writers
+import importlib
def setup(
@@ -14,7 +15,10 @@ def setup(
config_param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
stim_amplitudes = ["1pA", "5pA"]
diff --git a/c302/c302_TapWithdrawal.py b/c302/c302_TapWithdrawal.py
index ee508ade..b190968f 100644
--- a/c302/c302_TapWithdrawal.py
+++ b/c302/c302_TapWithdrawal.py
@@ -6,6 +6,7 @@
import c302
import sys
+import importlib
import neuroml.writers as writers
@@ -23,7 +24,10 @@ def setup(
config_param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
params = ParameterisedModel()
params.set_bioparameter(
@@ -62,7 +66,7 @@ def setup(
"ALML",
"ALMR",
]
- TW_sensory = ["PLML", "PLMR", "AVM", "ALML", "ALMR"]
+ # TW_sensory = ["PLML", "PLMR", "AVM", "ALML", "ALMR"]
all_motors = list(
VA_motors
+ VB_motors
@@ -421,7 +425,7 @@ def setup(
verbose=verbose,
)
- stim_amplitude = "6pA"
+ # stim_amplitude = "6pA"
# stim_amplitude = "5.135697186048022pA"
for vb in VB_motors:
diff --git a/c302/c302_TargetMuscle.py b/c302/c302_TargetMuscle.py
index 927ce365..b04b28fa 100644
--- a/c302/c302_TargetMuscle.py
+++ b/c302/c302_TargetMuscle.py
@@ -1,5 +1,6 @@
import c302
import sys
+import importlib
def setup(
@@ -13,7 +14,11 @@ def setup(
config_param_overrides={},
verbose=True,
):
- exec("from c302.parameters_%s import ParameterisedModel" % parameter_set, globals())
+ ParameterisedModel = getattr(
+ importlib.import_module("c302.parameters_%s" % parameter_set),
+ "ParameterisedModel",
+ )
+
params = ParameterisedModel()
params.set_bioparameter(
diff --git a/c302/c302_utils.py b/c302/c302_utils.py
index bad981a1..81c55721 100644
--- a/c302/c302_utils.py
+++ b/c302/c302_utils.py
@@ -1,7 +1,6 @@
import sys
import os
import re
-import traceback
import matplotlib.pyplot as plt
import numpy as np
@@ -82,8 +81,8 @@ def plots(a_n, info, cells, dt):
# print plt.xlim()
-def plots_prof(a_n, info, cells, dt):
- cProfile.run("real_plots(a_n, info, cells, dt)")
+# def plots_prof(a_n, info, cells, dt):
+# cProfile.run("real_plots(a_n, info, cells, dt)")
def generate_traces_plot(
@@ -414,7 +413,7 @@ def _show_conn_matrix(
fig.canvas.manager.set_window_title(title)
# cm = matplotlib.cm.get_cmap('gist_stern_r')
- if colormap == None:
+ if colormap is None:
cmap = plt.colormaps["gist_stern_r"]
else:
# cmap = plt.colormaps['gist_earth']
@@ -519,7 +518,7 @@ def generate_conn_matrix(
with Bundle("openworm/owmeta-data", version=6) as bnd:
all_neuron_info, all_muscle_info = c302._get_cell_info(bnd, all_cells)
except Exception as e:
- traceback.print_exc()
+ # traceback.print_exc()
c302.print_(
"Unable to connect to the owmeta bundle: %s\n Proceeding anyway..." % e
)
diff --git a/c302/parameters_C2.py b/c302/parameters_C2.py
index 17780d0e..114b78d8 100644
--- a/c302/parameters_C2.py
+++ b/c302/parameters_C2.py
@@ -549,10 +549,10 @@ def set_default_bioparameters(self):
# self.add_bioparameter("AVBL_to_DB7_elec_syn_gbase", "0.000002 nS", "BlindGuess", "0.1")
# self.add_bioparameter("AVBR_to_DB7_elec_syn_gbase", "0.000002 nS", "BlindGuess", "0.1")
- motors = ["DB1", "DB2", "DB3", "DB4", "DB5", "DB6", "DB7"]
+ # motors = ["DB1", "DB2", "DB3", "DB4", "DB5", "DB6", "DB7"]
- neuron_to_neuron_sigma_unit = "per_mV"
- neuron_to_neuron_mu_unit = "mV"
+ # neuron_to_neuron_sigma_unit = "per_mV"
+ # neuron_to_neuron_mu_unit = "mV"
"""values = [0.02662421961090314, 0.03534736844496468, 0.24117986141424783, 0.728445888242295, -31.097782892768087, -70.4530293802399, 0.0027901748325678665, 0.04819419381285881, 0.23145430508321702, 0.43259522880823403, -36.33291776403307, -59.353240638482205, 0.05582343246072261, 0.02190008612606287, 0.01, 0.31362780659357425, -66.21115226650004, -52.771417774165776, 0.022627891796868617, 0.019850673688929135, 0.5369334557283133, 0.6157151722578514, -56.58839267667179, -31.98566849893263, 0.0005311880646276632, 0.0007106752078277979, 0.5403093047212282, 0.851692451899331, -26.21928028856079, -36.07220973721469, 0.02239184298106873, 0.00557754534270731, 0.7336559136122108, 0.5396665394749418, -64.251546993354, -58.86832496681512, 0.05911723837418301, 0.05906803856778177, 0.3889133592395809, 0.9, -63.690021804793005, -65.0201808538768, 0.06252, 0.042808104791508095, 0.3870392542369817, 0.359369090000899, -62.00034119097063, -52.385364801981375, 0.01982498040815311, 0.0006263956386551118, 0.01, 0.07344429039663045, 3.2623740935761845, -24.383527105537627, 0.003234785879364064, 0.0013257779195953625, 0.6187551784924861, 0.02010414785586577, 3.037646907306896, -15.804515459300069, 0.008737088303665016, 0.005164680784308186, 0.6646075833887313, 0.6585834274110807, 3.8543086695981366, -60.13096941077282, 0.012477100014060296, 0.022424408328393895, 0.128433033088237, 0.31642838666989964, -5.188754434920856, 5.659506146829591, 0.002580608318239302, 0.011268010981673115, 0.38691673081318745, 0.4051876112158369, 0.08969391093452314, -38.19673533204123, 0.003652415316987105, 0.01447855276084489, 2e-05, 0.032406033165681754, 0.012313305082229144, 0.010630678619124256, 2e-05, 0.040750179035623724, 0.004113193789608253, 0.001621502777546093, 0.01857066607998348, 0.020426074336082088]
v = 0
From a0a53e7540317ef62dd81e9aa2a0e49240b7f471 Mon Sep 17 00:00:00 2001
From: pgleeson
Date: Tue, 14 Jan 2025 11:50:21 +0000
Subject: [PATCH 2/7] Regenerated images
---
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.../c302_B_Muscles_elec_neurons_neurons.png | Bin 98827 -> 98827 bytes
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examples/summary/images/neurons_A_Full.png | Bin 106459 -> 106459 bytes
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examples/summary/summary_A_Full.html | 2 +-
examples/summary/summary_A_Full.md | 2 +-
examples/summary/summary_A_IClamp.html | 2 +-
examples/summary/summary_A_IClamp.md | 2 +-
examples/summary/summary_A_Muscles.html | 2 +-
examples/summary/summary_A_Muscles.md | 2 +-
examples/summary/summary_A_Oscillator.html | 2 +-
examples/summary/summary_A_Oscillator.md | 2 +-
examples/summary/summary_A_Pharyngeal.html | 2 +-
examples/summary/summary_A_Pharyngeal.md | 2 +-
examples/summary/summary_A_Social.html | 2 +-
examples/summary/summary_A_Social.md | 2 +-
examples/summary/summary_A_Syns.html | 2 +-
examples/summary/summary_A_Syns.md | 2 +-
examples/summary/summary_B_Full.html | 2 +-
examples/summary/summary_B_Full.md | 2 +-
examples/summary/summary_B_IClamp.html | 2 +-
examples/summary/summary_B_IClamp.md | 2 +-
examples/summary/summary_B_Muscles.html | 2 +-
examples/summary/summary_B_Muscles.md | 2 +-
examples/summary/summary_B_Oscillator.html | 2 +-
examples/summary/summary_B_Oscillator.md | 2 +-
examples/summary/summary_B_Pharyngeal.html | 2 +-
examples/summary/summary_B_Pharyngeal.md | 2 +-
examples/summary/summary_B_Social.html | 2 +-
examples/summary/summary_B_Social.md | 2 +-
examples/summary/summary_B_Syns.html | 2 +-
examples/summary/summary_B_Syns.md | 2 +-
examples/summary/summary_C0_Full.html | 2 +-
examples/summary/summary_C0_Full.md | 2 +-
examples/summary/summary_C0_IClamp.html | 2 +-
examples/summary/summary_C0_IClamp.md | 2 +-
examples/summary/summary_C0_Muscles.html | 2 +-
examples/summary/summary_C0_Muscles.md | 2 +-
examples/summary/summary_C0_Oscillator.html | 2 +-
examples/summary/summary_C0_Oscillator.md | 2 +-
examples/summary/summary_C0_Pharyngeal.html | 2 +-
examples/summary/summary_C0_Pharyngeal.md | 2 +-
examples/summary/summary_C0_Social.html | 2 +-
examples/summary/summary_C0_Social.md | 2 +-
examples/summary/summary_C0_Syns.html | 2 +-
examples/summary/summary_C0_Syns.md | 2 +-
examples/summary/summary_C1_Full.html | 2 +-
examples/summary/summary_C1_Full.md | 2 +-
examples/summary/summary_C1_IClamp.html | 2 +-
examples/summary/summary_C1_IClamp.md | 2 +-
examples/summary/summary_C1_Muscles.html | 2 +-
examples/summary/summary_C1_Muscles.md | 2 +-
examples/summary/summary_C1_Oscillator.html | 2 +-
examples/summary/summary_C1_Oscillator.md | 2 +-
examples/summary/summary_C1_Pharyngeal.html | 2 +-
examples/summary/summary_C1_Pharyngeal.md | 2 +-
examples/summary/summary_C1_Social.html | 2 +-
examples/summary/summary_C1_Social.md | 2 +-
examples/summary/summary_C1_Syns.html | 2 +-
examples/summary/summary_C1_Syns.md | 2 +-
examples/summary/summary_C2_Full.html | 2 +-
examples/summary/summary_C2_Full.md | 2 +-
examples/summary/summary_C2_IClamp.html | 2 +-
examples/summary/summary_C2_IClamp.md | 2 +-
examples/summary/summary_C2_Muscles.html | 2 +-
examples/summary/summary_C2_Muscles.md | 2 +-
examples/summary/summary_C2_Oscillator.html | 2 +-
examples/summary/summary_C2_Oscillator.md | 2 +-
examples/summary/summary_C2_Pharyngeal.html | 2 +-
examples/summary/summary_C2_Pharyngeal.md | 2 +-
examples/summary/summary_C2_Social.html | 2 +-
examples/summary/summary_C2_Social.md | 2 +-
examples/summary/summary_C2_Syns.html | 2 +-
examples/summary/summary_C2_Syns.md | 2 +-
examples/summary/summary_C_Full.html | 2 +-
examples/summary/summary_C_Full.md | 2 +-
examples/summary/summary_C_IClamp.html | 2 +-
examples/summary/summary_C_IClamp.md | 2 +-
examples/summary/summary_C_Muscles.html | 2 +-
examples/summary/summary_C_Muscles.md | 2 +-
examples/summary/summary_C_Oscillator.html | 2 +-
examples/summary/summary_C_Oscillator.md | 2 +-
examples/summary/summary_C_Pharyngeal.html | 2 +-
examples/summary/summary_C_Pharyngeal.md | 2 +-
examples/summary/summary_C_Social.html | 2 +-
examples/summary/summary_C_Social.md | 2 +-
examples/summary/summary_C_Syns.html | 2 +-
examples/summary/summary_C_Syns.md | 2 +-
examples/summary/summary_D1_Full.html | 2 +-
examples/summary/summary_D1_Full.md | 2 +-
examples/summary/summary_D1_IClamp.html | 2 +-
examples/summary/summary_D1_IClamp.md | 2 +-
examples/summary/summary_D1_Muscles.html | 2 +-
examples/summary/summary_D1_Muscles.md | 2 +-
examples/summary/summary_D1_Oscillator.html | 2 +-
examples/summary/summary_D1_Oscillator.md | 2 +-
examples/summary/summary_D1_Pharyngeal.html | 2 +-
examples/summary/summary_D1_Pharyngeal.md | 2 +-
examples/summary/summary_D1_Social.html | 2 +-
examples/summary/summary_D1_Social.md | 2 +-
examples/summary/summary_D1_Syns.html | 2 +-
examples/summary/summary_D1_Syns.md | 2 +-
examples/summary/summary_D_Full.html | 2 +-
examples/summary/summary_D_Full.md | 2 +-
examples/summary/summary_D_IClamp.html | 2 +-
examples/summary/summary_D_IClamp.md | 2 +-
examples/summary/summary_D_Muscles.html | 2 +-
examples/summary/summary_D_Muscles.md | 2 +-
examples/summary/summary_D_Oscillator.html | 2 +-
examples/summary/summary_D_Oscillator.md | 2 +-
examples/summary/summary_D_Pharyngeal.html | 2 +-
examples/summary/summary_D_Pharyngeal.md | 2 +-
examples/summary/summary_D_Social.html | 2 +-
examples/summary/summary_D_Social.md | 2 +-
examples/summary/summary_D_Syns.html | 2 +-
examples/summary/summary_D_Syns.md | 2 +-
test.sh | 2 ++
524 files changed, 114 insertions(+), 112 deletions(-)
diff --git a/examples/summary/images/c302_B_Full_elec_neurons_neurons.png b/examples/summary/images/c302_B_Full_elec_neurons_neurons.png
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diff --git a/examples/summary/images/c302_B_Pharyngeal_elec_neurons_neurons.png b/examples/summary/images/c302_B_Pharyngeal_elec_neurons_neurons.png
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delta 48
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diff --git a/examples/summary/images/c302_C1_Full_inh_to_muscles.png b/examples/summary/images/c302_C1_Full_inh_to_muscles.png
index 9dd90ae156084d5f8e5e3be0144c55763b1df608..2f129a68a95110901b73a0feeb428abb49d6854a 100644
GIT binary patch
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diff --git a/examples/summary/images/c302_C1_Full_inh_to_neurons.png b/examples/summary/images/c302_C1_Full_inh_to_neurons.png
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GIT binary patch
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GIT binary patch
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diff --git a/examples/summary/images/c302_C1_Muscles_inh_to_muscles.png b/examples/summary/images/c302_C1_Muscles_inh_to_muscles.png
index c2bf9e996aee600e9a8c73ba5073fdaae06bc895..ccd0373e45a89c0792d0420c756fd588a2201264 100644
GIT binary patch
delta 48
zcmZqaW^L(ao#3Wmsb`?0kWo@nP;8~IpPN`xkdt4MlbNKKUzDzI!s4;5F>Pxaqns-M
Di#ZTR
delta 48
zcmZqaW^L(ao#3Wmp=Y3@kWo@nP;8~IpPN`xkdt4MlbNKKUzDzIx^e63#63
Dm0S^3
diff --git a/examples/summary/images/c302_C1_Muscles_inh_to_neurons.png b/examples/summary/images/c302_C1_Muscles_inh_to_neurons.png
index 0bafb4b2f79efece87c2a9eaefba4c35a6e31efc..5253180b4d53ef483072f304d70aaae116ef8b0c 100644
GIT binary patch
delta 48
zcmexyiS@@N)(LJ3mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F$!e@
E0M4cn)Bpeg
delta 48
zcmexyiS@@N)(LJ37J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgOGb004pg
B5!e6#
diff --git a/examples/summary/images/c302_C1_Oscillator_inh_to_neurons.png b/examples/summary/images/c302_C1_Oscillator_inh_to_neurons.png
index f1f246d59a72456fded3264e674b6f8071bbcf87..006624089cd9e74f843d58707dd2990f6967beee 100644
GIT binary patch
delta 45
zcmX>+pZV~7<_T^JmU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9+pZV~7<_T^J7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgN3+0|0_T
B5n%uT
diff --git a/examples/summary/images/c302_C1_Syns_exc_to_neurons.png b/examples/summary/images/c302_C1_Syns_exc_to_neurons.png
index 2f2d61f2c79be973144bcf192bc1ed747437b3b9..6b5ed74e4601c2c6efe6f3e2fdf36095af62d08f 100644
GIT binary patch
delta 45
zcmX?fi0RNFrU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F@7uu
E0M8#1y8r+H
delta 48
zcmccqf%WC>FC>FC>F}BM9
E0Ky0nvH$=8
delta 48
zcmaF6ljZGBmI-bO7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F;0vH
E0LKmz7XSbN
delta 48
zcmeyqoAvu{)(LJ37J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F&cLO
E0F}ZJ)&Kwi
delta 48
zcmbO^k!|Kgwh3+u7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgC>F^bFv
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delta 48
zcmeyhjqTSqwh3+u7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgC>F{Wk$
E0KZNV&j0`b
delta 48
zcmX?onf3H#)(LJ37J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9
B5)J?W
diff --git a/examples/summary/images/c302_C2_Oscillator_exc_to_neurons.png b/examples/summary/images/c302_C2_Oscillator_exc_to_neurons.png
index effa6a3a73de272a0da959b19ba91ca7b10cc8bc..51d1b04e7821c48b716ebc78d11397157961aa1c 100644
GIT binary patch
delta 45
zcmZqs#N76Yd4ijQrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgNH40RV+)
B5^Mkf
diff --git a/examples/summary/images/c302_C2_Oscillator_inh_to_neurons.png b/examples/summary/images/c302_C2_Oscillator_inh_to_neurons.png
index 241731e813ff8150a3e30262625e9e3728ec0aca..dec4a0e8d52b1876a05760ffe90fe5e4960f7bd7 100644
GIT binary patch
delta 45
zcmX@OfcfA8<_T^JmU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9NmD
diff --git a/examples/summary/images/c302_C2_Pharyngeal_elec_neurons_neurons.png b/examples/summary/images/c302_C2_Pharyngeal_elec_neurons_neurons.png
index bdbf3ec5d3aea97775c48bf333b014d38d73c182..11301527d681c11120642dd1a95f701665306bef 100644
GIT binary patch
delta 45
zcmdmglzIPA<_T^JmU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgOE10swOn
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diff --git a/examples/summary/images/c302_C2_Syns_exc_to_muscles.png b/examples/summary/images/c302_C2_Syns_exc_to_muscles.png
index bed225135a77c23976f8c0bea3b81bc191f7134e..677eeada24b7ca98dab651565f9295f6bb17e287 100644
GIT binary patch
delta 45
zcmezNp7Gmz#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgN4f0|0U&
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diff --git a/examples/summary/images/c302_C_Full_elec_neurons_neurons.png b/examples/summary/images/c302_C_Full_elec_neurons_neurons.png
index 847f922d3851c9aa0542788d68d34d1db6d26470..7b47161fd275ca4cedde468e2480948ef21fa1e6 100644
GIT binary patch
delta 48
zcmbQz$2O&pZGxMErJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>Bg2PG*u`eo?x<35&2PG*u`eo?x<>BgC>G5SOS
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diff --git a/examples/summary/images/c302_D1_Full_inh_to_muscles.png b/examples/summary/images/c302_D1_Full_inh_to_muscles.png
index 246d4f9f21d91a30ae43dc9694fe744d84621988..248d4593f4691407ce98f867f5a8d47d92e84a9f 100644
GIT binary patch
delta 48
zcmaDqjph9`mI-bOmU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F>-PP
E0JTIA;Q#;t
delta 48
zcmaDqjph9`mI-bO7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9mMH
E0KaDu@Bjb+
diff --git a/examples/summary/images/c302_D1_Full_inh_to_neurons.png b/examples/summary/images/c302_D1_Full_inh_to_neurons.png
index 227bb29ad95abc0ca931fdf0eb83d09cf000c9d1..439c577ae31d66ffd06c11ab5913721c973af8e7 100644
GIT binary patch
delta 48
zcmbO*jdcPLxhYuc8R#fvl#~<{Tj}fPCYBWB$_oIL
Cn-K*7
delta 48
zcmbO*jdcPLxhYua8R#fvl#~<{Tj}fPCYBWB2PG*u`eo?x<35&2PG*u`eo?x<>BgC>F*aKP
E0M-5yJOBUy
delta 48
zcmaF)mF4AEmI-bO7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9
diff --git a/examples/summary/images/c302_D1_Muscles_exc_to_neurons.png b/examples/summary/images/c302_D1_Muscles_exc_to_neurons.png
index 03f50b60fa4a3832a8e0bcf2d974c1a0bf04690a..42dbc7f2c79e0ec6073b3459f1d61aee827711f9 100644
GIT binary patch
delta 48
zcmZp@%i4OEb%L9MrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>Bg(^b
diff --git a/examples/summary/images/c302_D1_Muscles_inh_to_muscles.png b/examples/summary/images/c302_D1_Muscles_inh_to_muscles.png
index 1b846725822e88981eb1366c4cf25766bdb4a819..f1e62fa55abcf3b3403ecaee46e8b844c76e922a 100644
GIT binary patch
delta 48
zcmccchULN=mI-bOmU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F}^Yd
E0Lp(7S^xk5
delta 48
zcmccchULN=mI-bO7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F2PG*u`eo?x<35&2PG*u`eo?x<>BgNGT003(V
B5vKqE
diff --git a/examples/summary/images/c302_D1_Oscillator_exc_to_neurons.png b/examples/summary/images/c302_D1_Oscillator_exc_to_neurons.png
index fa568c401160c436b930f8f81d3c7cfcd9b92a23..95f0e6c9b87cf8e1fd73d00ad0ef2f67b0f72562 100644
GIT binary patch
delta 45
zcmZ3pfO*XV<_T^JmU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9@;Y
B5c2>4
delta 45
zcmdlug?Zx?<_T^J7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9Ca
B5$XT{
diff --git a/examples/summary/images/c302_D1_Social_exc_to_neurons.png b/examples/summary/images/c302_D1_Social_exc_to_neurons.png
index 77d392b7a5ed18f9d66bfe7128f0b1caeed3e64a..2ed520ef27a8e45cd51c63ca2db17c6b3d1f0b72 100644
GIT binary patch
delta 45
zcmaERis|hsrU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`91^|R(
B5gGsh
delta 45
zcmZ4Tf^o?U#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>Bg2PG*u`eo?x<35&2PG*u`eo?x<>BgYuC
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diff --git a/examples/summary/images/c302_D_Oscillator_elec_neurons_neurons.png b/examples/summary/images/c302_D_Oscillator_elec_neurons_neurons.png
index 99a92b80eeecf188535515505ffe282b3d88fb17..6d663dcd314170486ccd5fba27d0e52980832523 100644
GIT binary patch
delta 45
zcmX^8m+AChrU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgN3l0|0|>
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diff --git a/examples/summary/images/c302_D_Social_elec_neurons_neurons.png b/examples/summary/images/c302_D_Social_elec_neurons_neurons.png
index 4e4adef2cc36fbae20eed0b30f15ef3ffc3d45bd..4992c1a3533d11f0d6bd66b917884474851eb0b2 100644
GIT binary patch
delta 45
zcmbPxnrZH7rU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9`1ps&0
B5Ptvw
delta 45
zcmbPxnrZH7rU`Be7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&k
delta 45
zcmeBq$kg+YX@Z-Ag`R2PG*u`eo?x<>BgRm=004kK
B5t0A^
diff --git a/examples/summary/images/muscle_activity_B_IClamp.png b/examples/summary/images/muscle_activity_B_IClamp.png
index 55e3bf8ca7efc2626a5af463de0290b9e30bdbab..48a70c8693510d50879f4d03d08919ee27aa09b2 100644
GIT binary patch
delta 45
zcmccD&3Lbyae|wIrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgOp%0swz>
B5pMth
diff --git a/examples/summary/images/muscle_activity_B_Muscles.png b/examples/summary/images/muscle_activity_B_Muscles.png
index 28a4274c915d446139e3aaf3f841a934bf341a74..b6a1c37044ad60beccf1aadff504676da3cd89c3 100644
GIT binary patch
delta 45
zcmZ4gh-v*JrU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&(^b
delta 45
zcmey;!}z6#ae|wIg`R2PG*u`eo?x<>BgUBq0RV<@
B5i|e*
diff --git a/examples/summary/images/muscle_activity_C0_Full.png b/examples/summary/images/muscle_activity_C0_Full.png
index cf03e73bb70bfa1fae6f04cb1aa6b2ce6828710d..7976245a5c20548ea6101db8fe5ad606a27d553a 100644
GIT binary patch
delta 45
zcmaEQiTUXz<_T^JmU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgUZ!0swI{
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diff --git a/examples/summary/images/muscle_activity_C0_Muscles.png b/examples/summary/images/muscle_activity_C0_Muscles.png
index b95bb06b7c3ac44785b5d096e96bb468f620f3b5..5f8f54b238dcb0138113af9d17ce7ff1c6319d4b 100644
GIT binary patch
delta 45
zcmezLg6Y!>rU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9rU`Be7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9@~J
diff --git a/examples/summary/images/muscle_activity_C0_Syns.png b/examples/summary/images/muscle_activity_C0_Syns.png
index 73e218474516caed69f45e8122b330f4ed356b74..ca534e54788fa6142d69d581a60c21693635ec97 100644
GIT binary patch
delta 45
zcmdnl&A79hae|wIrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgL%<0swNC
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diff --git a/examples/summary/images/muscle_activity_C1_Full.png b/examples/summary/images/muscle_activity_C1_Full.png
index eae2a7371310bbe6695a7f763220c8d96b02555b..f5545a2e7b17accaa4bc65fde5ce2b0f4a6b5c3f 100644
GIT binary patch
delta 45
zcmX@Nhw0oNrU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgR;T0|0>a
B5eEPO
diff --git a/examples/summary/images/muscle_activity_C1_Muscles.png b/examples/summary/images/muscle_activity_C1_Muscles.png
index c2582bc7afc3decdf6e0ba1f8cbeb647253744c3..10e9a411c8bba12da42dfd738d4b8f2d5b9ecd38 100644
GIT binary patch
delta 45
zcmeA=#?*C;X@Z-ArJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgNFF1ORu3
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diff --git a/examples/summary/images/muscle_activity_C1_Syns.png b/examples/summary/images/muscle_activity_C1_Syns.png
index 450bf80777af1735d43e0fb05c61de6f9697a1bb..15be21bacb0cd6457393865ed7f98fac71da889a 100644
GIT binary patch
delta 45
zcmbQ#$~dW&ae|wIrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgT-00RUqM
B5PSdt
diff --git a/examples/summary/images/muscle_activity_C2_Full.png b/examples/summary/images/muscle_activity_C2_Full.png
index 2e5fdab3c9b494d04e71f1af424a074f5de9cb7a..8bf8076e0f919773b38bcadeb3fb0bfd28dc8a5a 100644
GIT binary patch
delta 45
zcmaEJi22PS<_T^JmU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9z>%
delta 45
zcmZo|W^8R{oZzNlp=Y3@kWo@nP;8~IpPN`xkdt4MlbNKKUzDzIx^e63jcM|Z0A1G*
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diff --git a/examples/summary/images/muscle_activity_C2_Muscles.png b/examples/summary/images/muscle_activity_C2_Muscles.png
index 76f26db28e8b452594d17b0bba7d402955b8dc39..ec60eb0e3b57e2338791d529e53c5bcffa3da99e 100644
GIT binary patch
delta 45
zcmZpe&fGAad4ijQrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgOFQ1^{F3
B5cdE8
diff --git a/examples/summary/images/muscle_activity_C2_Syns.png b/examples/summary/images/muscle_activity_C2_Syns.png
index 30fb2b8a6c3b0e1a757dd41fbf82070719ef544d..6bb78fdcb91ab4d6f325e606f728a39960d5b7e2 100644
GIT binary patch
delta 45
zcmey;#rUO*ae|wIrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgUBq0sw`@
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diff --git a/examples/summary/images/muscle_activity_C_Full.png b/examples/summary/images/muscle_activity_C_Full.png
index 239abf31cc89c5085324e1365fe6f394277f85e7..3bf7e246d3b9418fb372faa05961bbd46c147dc3 100644
GIT binary patch
delta 45
zcmbPxglX;(rU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgOQ<0sx2M
B5xM{X
diff --git a/examples/summary/images/muscle_activity_C_Muscles.png b/examples/summary/images/muscle_activity_C_Muscles.png
index a57ef67cafa2d36d7d6eece4bdfe592edc049e7f..bcec30da6898257ce83b6bd5939c750ebc4ae3a3 100644
GIT binary patch
delta 45
zcmeylkLl+=rU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`94
delta 45
zcmeylkLl+=rU`Be7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9^*B
B5lH|5
diff --git a/examples/summary/images/muscle_activity_D1_Full.png b/examples/summary/images/muscle_activity_D1_Full.png
index b3954b54c54583545f8179cce5a9ffc02f13372f..00bd564361bebd6a3539d68859d25b4072378040 100644
GIT binary patch
delta 45
zcmZp9#?2PG*u`eo?x<35&2PG*u`eo?x<>BgSdT$W;
diff --git a/examples/summary/images/muscle_activity_D1_Muscles.png b/examples/summary/images/muscle_activity_D1_Muscles.png
index 19863272d98513401f5f93ba6a92e2933cf22b6d..c9a7767c03dfb0949c3883e3c2b9eadd51dc273c 100644
GIT binary patch
delta 45
zcmdo0ifR8VrU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgOFt004;X
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diff --git a/examples/summary/images/muscle_activity_D_Muscles.png b/examples/summary/images/muscle_activity_D_Muscles.png
index a3a8838e2ef6bd1183adef72d984b8873837cd43..0e429fbea16f1dd70338e34cc85e212e2aebd918 100644
GIT binary patch
delta 45
zcmZ2?l4;#ZrU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9%h4I`J#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9%h4I`J#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F`DxL
E0GQ|yasU7T
delta 48
zcmbO`lV$EqmI-bO7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgSz^0sv*(
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diff --git a/examples/summary/images/muscles_B_Full.png b/examples/summary/images/muscles_B_Full.png
index b2f6fb497101f8c3d60617f5c4f03a92252a93fe..4dbb2bb17bdd4d02752719ebf1637c16e9f948f4 100644
GIT binary patch
delta 45
zcmaF$oaxnbrU`BemU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9~1^}D)
B5v%|J
delta 45
zcmaF$oaxnbrU`Be7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9P8
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diff --git a/examples/summary/images/muscles_B_Syns.png b/examples/summary/images/muscles_B_Syns.png
index a547921afcdd82bad642fe855ff36f89c18bbd7b..2d311d21c72500520e590297ddae017ecd4aea96 100644
GIT binary patch
delta 45
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diff --git a/examples/summary/images/muscles_C2_Syns.png b/examples/summary/images/muscles_C2_Syns.png
index d7c1fee16563f50765e2423adfb70a36ef1785b5..2f77cde2d28be66308b080e3c8d3efec6065620c 100644
GIT binary patch
delta 45
zcmZph&Db`Zae|wIrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgN500sv+-
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diff --git a/examples/summary/images/muscles_C_Full.png b/examples/summary/images/muscles_C_Full.png
index e201c36a665c501bf41097ac9e8a134b13b572ef..3cc30db5768971157e5717356b0aeb36f8266165 100644
GIT binary patch
delta 45
zcmZo&&fL13d4ijQrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&OV
delta 45
zcmZo&&fL13d4ijQg`R2PG*u`eo?x<>BgSy71^{aV
B5iS4#
diff --git a/examples/summary/images/muscles_C_IClamp.png b/examples/summary/images/muscles_C_IClamp.png
index 1c8aabebf736504d91114d483f18c36029eebeef..c8ec480a31fa73bd45d5ab04d36e22e41f55cc57 100644
GIT binary patch
delta 45
zcmeBL#Mrfnae|wIrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgNEK003(4
B5i9@z
diff --git a/examples/summary/images/muscles_C_Muscles.png b/examples/summary/images/muscles_C_Muscles.png
index 4af2129fd6dde4227a465ef29f7197db10d7687a..d7fe669f840bf1e8040f37b2e2c763890fb29933 100644
GIT binary patch
delta 45
zcmeBK$=tJ&d4ijQrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgRmw0RV0t
B5l8?4
diff --git a/examples/summary/images/muscles_C_Syns.png b/examples/summary/images/muscles_C_Syns.png
index 3e2b17b34ab750bac50e48b03340da3b7102c1c8..40e29b40b9e808091001dce7c519a6de15869118 100644
GIT binary patch
delta 45
zcmeymi1F(p#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9E
B5pDng
diff --git a/examples/summary/images/muscles_D1_Full.png b/examples/summary/images/muscles_D1_Full.png
index 8c950daf8b663e52b76fd9328a7a20ec555a5946..79b5ff738655e91a26752f5c1f4ddc46e99c4ffe 100644
GIT binary patch
delta 45
zcmdnAj(O8M<_T^JmU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9p4*+-6
B5jOw;
delta 45
zcmZ2{fO+u&<_T^J7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9k
diff --git a/examples/summary/images/muscles_D_IClamp.png b/examples/summary/images/muscles_D_IClamp.png
index 425703a8867833e5be38681c11002c58b6de0384..cc7ae4aaf33b7fbbab8a3ca2500466f02ab2970e 100644
GIT binary patch
delta 45
zcmX>!f$`7;#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9!f$`7;#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9d
B5Gw!x
delta 45
zcmaDpkMa3D#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9
diff --git a/examples/summary/images/neuron_activity_B_Full.png b/examples/summary/images/neuron_activity_B_Full.png
index f22109a1fa956b486cc41dcd8a4ba6c47d0b26b9..889300902bf8cab1044f42e720d0b314919409d0 100644
GIT binary patch
delta 48
zcmZ3znQirEwh3+umU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F}ltK
E0H~J{VE_OC
delta 48
zcmZ3znQirEwh3+u7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgS;T2LNIt
B5a$2@
diff --git a/examples/summary/images/neuron_activity_B_Muscles.png b/examples/summary/images/neuron_activity_B_Muscles.png
index a2bc9bcf7844c2a76f6792bb7bdfbd0a68a3efee..b194730b5fadd01908b8f7373143126c6129daac 100644
GIT binary patch
delta 48
zcmaE|lJ&_-)(LJ3mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>G1i3u
E0J)M8u>b%7
delta 48
zcmaE|lJ&_-)(LJ37J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9HszyJUM
diff --git a/examples/summary/images/neuron_activity_B_Oscillator.png b/examples/summary/images/neuron_activity_B_Oscillator.png
index 6ac33d5805e999cf748b914ce6254e4917bf66e9..be87660951744ca84876b5dcc0fc077d5849cb3f 100644
GIT binary patch
delta 45
zcmexxm+`}0#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9v2LPcN
B5^?|l
diff --git a/examples/summary/images/neuron_activity_B_Pharyngeal.png b/examples/summary/images/neuron_activity_B_Pharyngeal.png
index 048b061be36e457c9218046ed722733cad29cbce..730f4c0d399bf59e750d151ba08bc19ee20221d2 100644
GIT binary patch
delta 45
zcmcb7oAL5(#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9>
delta 45
zcmdn9jd9O5#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9C>G5TKw
E0H-bynE(I)
delta 48
zcmdnGn0@PF_6cqZ7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgUk?0swx<
B5#j&<
diff --git a/examples/summary/images/neuron_activity_C0_Muscles.png b/examples/summary/images/neuron_activity_C0_Muscles.png
index e3e0b472c5ceb7aaea1aabd6cdd8a55094e22b4f..6279c97d96433aef71906b22fe013ad273bef525 100644
GIT binary patch
delta 48
zcmdn|o^|tk)(LJ3mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>G5VGR
E0KjMw%>V!Z
delta 48
zcmdn|o^|tk)(LJ37J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9^n|
B5$pf}
diff --git a/examples/summary/images/neuron_activity_C0_Social.png b/examples/summary/images/neuron_activity_C0_Social.png
index 7ad1ed2562e029033ad4b4bd7d07bc5082a10ed8..12d6b5febd4e834ba59fa822bd4aba1b97e1d457 100644
GIT binary patch
delta 45
zcmeyonDO&s#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F&ga!
E0J}yJ+yDRo
delta 48
zcmbR7n{CE#wh3+u7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9i_@%
diff --git a/examples/summary/images/neuron_activity_C1_IClamp.png b/examples/summary/images/neuron_activity_C1_IClamp.png
index 0b8b9024cd817fa0883b56b441274101b580ff0c..c5c9aeb0685a74af1227fdff3edc9c844beefb22 100644
GIT binary patch
delta 45
zcmey=!}zI(ae|wIrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&OV
delta 45
zcmey=!}zI(ae|wIg`R2PG*u`eo?x<>BgUBp0RV-*
B5iS4#
diff --git a/examples/summary/images/neuron_activity_C1_Muscles.png b/examples/summary/images/neuron_activity_C1_Muscles.png
index d51b0f538dd71d74c6e33aed8311622a3cab2af9..c171513c135ae335d81da45adb74ec9a6fe3e7ed 100644
GIT binary patch
delta 48
zcmeA;$l7s`b%L9MrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgC4rWFSOZW9ml
delta 45
zcmbQRmvI6RxhYua8R#fvl#~<{Tj}fPCYBWB}@#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9}@#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F&^9t
E0Kzg7ivR!s
delta 48
zcmZ4fhi&;Ewh3+u7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9;oALN;#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9;oALN;#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9U+)(LJ3mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F$yOG
E0Lr@&xc~qF
delta 48
zcmex)jP>U+)(LJ37J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F-ETj
E0KK0P{Qv*}
delta 48
zcmX?jo$cUtwh3+u7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9Y`ae|wIrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&Y`ae|wIg`R2PG*u`eo?x<>BgRC(1psi%
B5oZ7Z
diff --git a/examples/summary/images/neuron_activity_C_Muscles.png b/examples/summary/images/neuron_activity_C_Muscles.png
index adb00c4092eba40b8ab54fc520d08fae980c602e..46a2dfc4fd69814f8d4089b725fe0949b1f018cd 100644
GIT binary patch
delta 48
zcmZ3qk#*5V)(LJ3mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>G1^1`
E0Hg2_{{R30
delta 48
zcmZ3qk#*5V)(LJ37J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgNE}004A4
B5pVzi
diff --git a/examples/summary/images/neuron_activity_C_Pharyngeal.png b/examples/summary/images/neuron_activity_C_Pharyngeal.png
index f2f69d7ee26518ad176d187aeac564be9c8e6158..6200cf7eab92f389458c0f4ef7625775e0091d71 100644
GIT binary patch
delta 45
zcmcb=hw=U%#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgRoi0|05D
B5UT(H
diff --git a/examples/summary/images/neuron_activity_C_Syns.png b/examples/summary/images/neuron_activity_C_Syns.png
index 1ea3f76114cfdc0f16c1753d33d53c7e58ddad4d..49ff5a234fa755a8bec107570277c724957f79fd 100644
GIT binary patch
delta 45
zcmeyli1Ftl#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F2PG*u`eo?x<35&2PG*u`eo?x<>BgQcX0sx4O
B5k~+3
diff --git a/examples/summary/images/neuron_activity_D1_Muscles.png b/examples/summary/images/neuron_activity_D1_Muscles.png
index eb2c15ccefa1c49034d86776cb416ea088dc72b0..8b22bf1f66109ae1d39d9888088d4c2caefea3ad 100644
GIT binary patch
delta 48
zcmdnGi*@TR)(LJ3mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F`kbB
E0IxI=&Hw-a
delta 48
zcmdnGi*@TR)(LJ37J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9>
diff --git a/examples/summary/images/neuron_activity_D1_Syns.png b/examples/summary/images/neuron_activity_D1_Syns.png
index 1d93537910741fab3a2f745a25797276a73752e6..3e95f48f7dfade6422a376f095e78498d21c6931 100644
GIT binary patch
delta 45
zcmex7hw<|q#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F|Mly
E0J$C#1^@s6
delta 48
zcmbR8gLTRe)(LJ37J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>BgMf60svC>G1k}u
E0M&{THUIzs
delta 48
zcmaF#o8{4OmI-bO7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9MF0Q*
diff --git a/examples/summary/images/neuron_activity_D_Oscillator.png b/examples/summary/images/neuron_activity_D_Oscillator.png
index b5103fc1502511a344d3cb1c0572691ba9f94ea9..ac9530e1bb7a49604fab601888b65492037cefb1 100644
GIT binary patch
delta 45
zcmeyklkwwD#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9X
B5gh;k
delta 45
zcmdmTjd9C0#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F_z8;
E0KTyj4*&oF
delta 48
zcmcb;pY8U3wh3+u7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`94
delta 45
zcmaEKknzz$#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&2PG*u`eo?x<>Bgz0sx>G
B5sm-=
delta 45
zcmaF!neokM#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9_=K
B5}g15
diff --git a/examples/summary/images/neurons_A_Pharyngeal.png b/examples/summary/images/neurons_A_Pharyngeal.png
index 896a17127f226cf8403b585f59cad62a6d86fcb7..400f0cf2cd5cd30214ed28be3d15aa4abaf79caf 100644
GIT binary patch
delta 45
zcmaFZ!}PF+X@Z-ArJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgUk=1ptC)
B5nBD#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9nBD#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9TA
diff --git a/examples/summary/images/neurons_B_Full.png b/examples/summary/images/neurons_B_Full.png
index 2a2603acbca9cdb7402ffda323d8b5565d3129aa..f0c8d42846d501d5db4b0a6082339185f550f507 100644
GIT binary patch
delta 48
zcmeBv&DQ;zZGxMErJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>Bg2PG*u`eo?x<35&2PG*u`eo?x<>Bg2PG*u`eo?x<35&2PG*u`eo?x<>BgS0=004vG
B5z_zw
diff --git a/examples/summary/images/neurons_B_Pharyngeal.png b/examples/summary/images/neurons_B_Pharyngeal.png
index 6ba6bb70b414aa76ca47e829a8d909dcb85240df..a275ef2f2061d32baf1c35372fe9494ae2727c53 100644
GIT binary patch
delta 45
zcmbQ-#5B2yX@Z-ArJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&2PG*u`eo?x<>BgRy^003k1
B5jg+=
diff --git a/examples/summary/images/neurons_B_Social.png b/examples/summary/images/neurons_B_Social.png
index 3a1294df25b9646db0f473c57d0b6e8ef0223f0b..8bcc4fc449be7f7023bbc66562a88b552d1acf92 100644
GIT binary patch
delta 45
zcmcb0kMY($#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9z
delta 45
zcmdnDpK;%Q#tCi;7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F{bYT
E0LxwyVgLXD
delta 48
zcmX^6k?rh9wh3+u7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`92PG*u`eo?x<35&@~
delta 45
zcmZp8#@O(Tae|wIg`R2PG*u`eo?x<>BgS-h0sww0
B5x4*V
diff --git a/examples/summary/images/neurons_C0_Social.png b/examples/summary/images/neurons_C0_Social.png
index 8afa2758134f8314ffc9a66bd9bc3ccdb6e09b4a..d2ab5caa3111d19546785e689b3bd5e272c7dbbd 100644
GIT binary patch
delta 45
zcmex=mht~t#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F<$!#
E0LQu#_y7O^
delta 48
zcmdn2PG*u`eo?x<35&2PG*u`eo?x<>BgNG{0sv)*
B5dr`J
diff --git a/examples/summary/images/neurons_C1_Muscles.png b/examples/summary/images/neurons_C1_Muscles.png
index 71c0456add493c1f7cccb47a404a046526b4f2df..6bade3d8af3a49ec46933d1d8da43b4b504fa3bc 100644
GIT binary patch
delta 48
zcmZ2Bfo<6Ywh3+umU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F&=0K
E0Gl}xdH?_b
delta 48
zcmZ2Bfo<6Ywh3+u7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9u0RWm$
B5_Jd
B5uyM9
diff --git a/examples/summary/images/neurons_C1_Syns.png b/examples/summary/images/neurons_C1_Syns.png
index 69565d02f0dfcf726e21c98c3001b351f77e09ae..769708fc22552523d7779e0f6db32a335ecb0116 100644
GIT binary patch
delta 45
zcmbQZiE-j4#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9Iz
B5mx{J
diff --git a/examples/summary/images/neurons_C2_Muscles.png b/examples/summary/images/neurons_C2_Muscles.png
index e7b5709140709981b064a5ddbe4e55f50217f380..ab5e0f0e4e341abaaf4715f481080552e12a7484 100644
GIT binary patch
delta 48
zcmZ3poNdi=wh3+umU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F}h6#
E0HmxDMgRZ+
delta 48
zcmZ3poNdi=wh3+u7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9Xkae|wIrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&Xkae|wIg`R2PG*u`eo?x<>BgSyz0RVvI
B5mo>I
diff --git a/examples/summary/images/neurons_C2_Pharyngeal.png b/examples/summary/images/neurons_C2_Pharyngeal.png
index 1756176dca61f791ac72adf28e4f62d94dbcd148..32715d14b64ac55ada5c7cdf233729d40fb3e24c 100644
GIT binary patch
delta 45
zcmaF$lkwG0#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`90|2O9
B5~ctE
diff --git a/examples/summary/images/neurons_C2_Social.png b/examples/summary/images/neurons_C2_Social.png
index 8c11f7af03ad1767249a04be55f5f8b7e788b137..abcb861c72bd0cb8e8a63c6644d6457e0ae0dacc 100644
GIT binary patch
delta 45
zcmdmZiE-m4#tCi;mU;#{3K=CO1;tkS`nicE1v&X8Ihjd%`9C>F-q(J
E0NgSXa{vGU
delta 48
zcmezOf$iT1wh3+u7J3Fc3K=CO1;tkS`nicE1v&X8Ihjd%`9b%L9MrJjL~LPkkRL9vy-er{q(K~8>2PG*u`eo?x<35&