.travis.yml

# The open-worm-analysis-toolbox Travis-CI build configuration file
#
# The original template for this .travis.yml came from 
# https://gist.github.com/dan-blanchard/7045057

language: python
python:
  - 2.7
  #Requires: https://stackoverflow.com/questions/39111886/python-3-4-64-bit-download
  #Basically for conda you need to setup a virtual environment to support older python versions
  #- 3.3
  #- 3.4
  - 3.5
  - 3.6
  
notifications:
  email: false

services:
    - xvfb
 
before_install:
  # Fix a matplotlib error
  # http://ryanvarley.uk/solutions/2014/05/14/how-to-solve-travis-ci-matplotlib-tclerror-no-display/
  - "export DISPLAY=:99.0"
  - echo `date`

  # Create a valid user_config.py file for open-worm-analysis-toolbox. OWAT
  # needs this to execute its main __init__.py
  - sudo /bin/cp $TRAVIS_BUILD_DIR/open_worm_analysis_toolbox/travis_config.txt $TRAVIS_BUILD_DIR/open_worm_analysis_toolbox/user_config.py

  - pip install .

  # Diagnostic: list all installed Python modules
  - pydoc modules

install:
  - pip install --upgrade pip
  - pip install six
  - pip install pep8

before_script:
  - mkdir $TRAVIS_BUILD_DIR/example_data
  - cd $TRAVIS_BUILD_DIR/example_data
  # TODO: Presumably the initial address could be a variable
  #- wget "https://googledrive.com/host/0B7to9gBdZEyGNWtWUElWVzVxc0E/example_contour_and_skeleton_info.mat" -O example_contour_and_skeleton_info.mat
  #- wget "https://drive.google.com/uc?export=download&id=0B7to9gBdZEyGX2tFQ1JyRzdUYUE" -O example_video_feature_file.mat
  #- wget "https://drive.google.com/uc?export=download&id=0B7to9gBdZEyGakg5U3loVUktRm8" -O example_video_norm_worm.mat
  
  #From https://gist.github.com/iamtekeste/3cdfd0366ebfd2c0d805
  - wget --load-cookies /tmp/cookies.txt "https://docs.google.com/uc?export=download&confirm=$(wget --quiet --save-cookies /tmp/cookies.txt --keep-session-cookies --no-check-certificate 'https://docs.google.com/uc?export=download&id=0B7to9gBdZEyGakg5U3loVUktRm8' -O- | sed -rn 's/.*confirm=([0-9A-Za-z_]+).*/\1\n/p')&id=0B7to9gBdZEyGakg5U3loVUktRm8" -O example_video_norm_worm.mat && rm -rf /tmp/cookies.txt
  - wget --load-cookies /tmp/cookies.txt "https://docs.google.com/uc?export=download&confirm=$(wget --quiet --save-cookies /tmp/cookies.txt --keep-session-cookies --no-check-certificate 'https://docs.google.com/uc?export=download&id=0B7to9gBdZEyGX2tFQ1JyRzdUYUE' -O- | sed -rn 's/.*confirm=([0-9A-Za-z_]+).*/\1\n/p')&id=0B7to9gBdZEyGX2tFQ1JyRzdUYUE" -O example_video_feature_file.mat && rm -rf /tmp/cookies.txt
  - wget --load-cookies /tmp/cookies.txt "https://docs.google.com/uc?export=download&confirm=$(wget --quiet --save-cookies /tmp/cookies.txt --keep-session-cookies --no-check-certificate 'https://docs.google.com/uc?export=download&id=0B7to9gBdZEyGWVAzUlYwbk1ad0E' -O- | sed -rn 's/.*confirm=([0-9A-Za-z_]+).*/\1\n/p')&id=0B7to9gBdZEyGWVAzUlYwbk1ad0E" -O example_contour_and_skeleton_info.mat && rm -rf /tmp/cookies.txt

  
  
  # TODO: Presumably we could run some command on the directory
  # This may no longer be necessary, found other bugs ...
  - ls -l
  - chmod 777 example_contour_and_skeleton_info.mat
  - chmod 777 example_video_feature_file.mat
  - chmod 777 example_video_norm_worm.mat
  - pwd
  - ls -l
  - echo `date`
 
# Run test
script:
  # Run pep8 on all .py files in all subfolders
  # We must ignore E402 module level import not at top of file
  # because of use case sys.path.append('..'); import <module>
  # - find . -name \*.py -exec pep8 --ignore=E402 {} +
  # NOTE: To correct any errors in the above pep8 check, run the 
  # following to clear out about 80% of the issues automatically:
  # # Get the latest version of the repo
  # git pull
  # # Run autopep8 on all .py files in all subfolders
  # find . -name \*.py -exec autopep8 --recursive --aggressive --aggressive --in-place {} +
  # # Push these changes to GitHub
  # git commit -a -m "autopep8"

  - echo `date`
  - cd $TRAVIS_BUILD_DIR/tests
  - pwd
  - nosetests --nocapture