Repositories list

• ds-analysis

  Public
  Repository containing all notebooks and scripts for Down Syndrome analysis

  Jupyter Notebook

  •1•0•0•0•Updated Feb 28, 2025Feb 28, 2025

• braintypicality-scripts

  Public
  Scripts for processing and running MSMA models on brain data

  Jupyter Notebook

  •1•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• sade

  Public
  Score-based models for anomaly detection, focused on 3D brain MRIs

  Jupyter Notebook

  •

  MIT License

  •1•1•0•0•Updated Feb 25, 2025Feb 25, 2025

• DTIPlayground

  Public
  An integrated framework for DWI Image QC and processing

  Python

  •

  MIT License

  •2•12•8•0•Updated Feb 13, 2025Feb 13, 2025

• SAXIBrainSurfaceQCSlicerExtension

  Public
  Quality Control Model

  Python

  •1•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• categorical-dsm

  Public
  Denoising Score Matching for Categorical Data

  Jupyter Notebook

  •2•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• DTIPlaygroundLab

  Public
  DTIPlayground Web UI Project

  Vue

  •2•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• SlicerSurfaceLearner

  Public
  A Slicer extension to apply convolutional neural network based classifiers on surface meshes (e.g. brain surface)

  Shell

  •5•0•0•0•Updated Jun 28, 2024Jun 28, 2024

• SPHARM-PDM

  Public
  Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. SPHARM-PDM is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis.

  decompositionspherical-harmonics3d-slicer-extension+ 13d-models

  C++

  •

  Apache License 2.0

  •22•50•8•0•Updated Jun 25, 2024Jun 25, 2024

• MeshToLabelMap

  Public
  3d-slicer-extension

  C++

  •

  Apache License 2.0

  •7•6•3•0•Updated Jun 14, 2024Jun 14, 2024

• NeuroRuler

  Public
  A program that calculates head circumference from MRI data (.nii, .nii.gz, .nrrd).

  Python

  •

  MIT License

  •4•8•19•0•Updated May 15, 2024May 15, 2024

• BrainKeychainAutomation

  Public
  Python

  •

  BSD 2-Clause "Simplified" License

  •1•1•0•0•Updated May 6, 2024May 6, 2024

• ShapePopulationViewer

  Public
  ShapePopulationViewer is a software that allows you to dynamically interact with multiple surfaces at the same time

  visualizationpopulation3d-models+ 2color-mapping3d-slicer-extension

  C++

  •

  Apache License 2.0

  •16•2•2•0•Updated Apr 23, 2024Apr 23, 2024

• 3DMetricTools

  Public
  3DMeshMetric is a visualization tool that computes and displays surface-to-surface distance between two triangle meshes using user-specified uniform sampling (based on the source code of MeshValmet: http://www.nitrc.org/projects/meshvalmet).

  statistics3d-models3d-slicer-extension

  C++

  •

  Apache License 2.0

  •11•6•2•0•Updated Apr 23, 2024Apr 23, 2024

• NeosegPipeline

  Public
  This tool allows segmentin brain MRI using a multi-atlas based approach either via joint label fusion (ANTS) or via generating a subject-specific atlas.

  C++

  •

  Apache License 2.0

  •8•6•6•0•Updated Apr 2, 2024Apr 2, 2024

• MUMMI

  Public
  MUlti-Modality Mri Imputation

  Apache License 2.0

  •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

• DTIProcessToolkit

  Public
  DTIProcess is a DTI processing and analysis toolkit developed in UNC and University of Utah

  estimationdiffusion-mri3d-slicer-extension

  C++

  •

  Apache License 2.0

  •8•7•2•0•Updated Oct 26, 2023Oct 26, 2023

• dcm_to_bids

  Public
  Converts a dicom directory to bids format

  Python

  •

  Apache License 2.0

  •0•0•3•0•Updated Aug 22, 2023Aug 22, 2023

• BreezeStyleSheets

  Public
  Breeze/BreezeDark-like Qt StyleSheets

  Python

  •

  MIT License

  •129•1•0•0•Updated May 6, 2023May 6, 2023

• GROUPS

  Public
  Group wise registration for 3d-models

  registration3d-models3d-slicer-extension

  C++

  •

  Apache License 2.0

  •11•0•4•0•Updated Apr 3, 2023Apr 3, 2023

• SurfRemesh

  Public
  C++

  •6•0•0•1•Updated Apr 3, 2023Apr 3, 2023

• RigidAlignment

  Public
  Rigid alignment of landmarks on the unit sphere

  3d-slicer-extension

  C++

  •

  Apache License 2.0

  •5•1•0•0•Updated Apr 3, 2023Apr 3, 2023

• DTIAtlasBuilder

  Public
  This tool creates an Atlas image as an average of several DTI images that will be registered

  C++

  •

  Apache License 2.0

  •6•6•2•0•Updated Feb 3, 2023Feb 3, 2023

• DTIPlaygroundNative

  Public
  DTIPlayground Native

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 30, 2023Jan 30, 2023

• MIDLLatexTemplate

  Public
  Latex template for the MIDL Conference

  TeX

  •90•0•0•0•Updated Jan 10, 2023Jan 10, 2023

• MeshValmet

  Public
  MeshValmet is a tool that measures surface to surface distance between two triangle meshes using user-specified uniform sampling

  C++

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Dec 2, 2022Dec 2, 2022

• SLCN_challenge_UNC

  Public
  This repository contains the code used for the Surface Learning For Clinical Neuroscience

  Python

  •1•0•0•0•Updated Aug 31, 2022Aug 31, 2022

• DTIPlaygroundTools

  Public
  DTIPlayground required toolset build script

  CMake

  •

  Apache License 2.0

  •1•0•0•0•Updated Aug 11, 2022Aug 11, 2022

• Local_EACSF

  Public
  C++

  •

  Apache License 2.0

  •3•0•1•0•Updated Apr 15, 2022Apr 15, 2022

• ReadImageHeader

  Public
  Small tool to print (ITK) image header information. It can also be used to convert an image into a different format.

  C++

  •2•0•0•0•Updated Feb 25, 2022Feb 25, 2022