Repositories list

• NextPolish

  Public
  Fast and accurately polish the genome generated by long reads.

  assemblygenomepolish

  C

  •

  GNU General Public License v3.0

  •28•217•43•1•Updated Jan 9, 2025Jan 9, 2025

• NextPolish2

  Public
  Repeat-aware polishing genomes assembled using HiFi long reads

  genome-assemblygenome-polisht2t-polish

  Rust

  •

  Other

  •3•77•1•0•Updated Nov 19, 2024Nov 19, 2024

• NextDenovo

  Public
  Fast and accurate de novo assembler for long reads

  assemblerpacbiooxford-nanopore+ 2genome-assemblylong-reads

  C

  •

  GNU General Public License v3.0

  •53•377•47•0•Updated May 10, 2024May 10, 2024

• nextsv

  Public
  C

  •

  MIT License

  •8•33•8•0•Updated Apr 13, 2024Apr 13, 2024

• GrandSTR

  Public
  Shell

  •0•4•0•0•Updated Jun 22, 2021Jun 22, 2021

• GrandSV

  Public
  0•1•0•0•Updated Jun 1, 2021Jun 1, 2021

• SCAN-seq

  Public archive
  single cell amplification and sequencing of full-length RNAs by Nanopore platform

  0•4•0•0•Updated May 11, 2020May 11, 2020

• Sniffles

  Public
  Structural variation caller using third generation sequencing

  HTML

  •

  MIT License

  •96•2•0•0•Updated Apr 26, 2019Apr 26, 2019

• inScan

  Public
  Region based insertion detection from long reads

  Python

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Jun 21, 2018Jun 21, 2018

• pipeline-for-isoseq

  Public
  A pipeline for isoseq

  Perl

  •11•23•1•0•Updated Jun 8, 2018Jun 8, 2018

• bio-playground

  Public
  miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

  C

  •

  MIT License

  •104•2•0•0•Updated May 16, 2018May 16, 2018

• uniline

  Public
  Assembly-based analysis

  Perl

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jul 12, 2016Jul 12, 2016

• ddRAD-pipeline

  Public
  Perl

  •3•1•0•0•Updated Apr 11, 2016Apr 11, 2016