TurtleTools

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11 repositories

portein
Public
2D portraits of 3D protein structures
bioinformatics protein-structure plotting
Python
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MIT License
•0•17•0•0•Updated Feb 5, 2024Feb 5, 2024
caretta
Public
A software-suite to perform multiple protein structure alignment and structure feature extraction.
protein-structure protein alignment
Python
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BSD 3-Clause "New" or "Revised" License
•5•27•6•0•Updated Aug 9, 2023Aug 9, 2023
geometricus
Public
A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
machine-learning protein-structure feature-engineering alignment-free invariant-features proteins
Jupyter Notebook
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MIT License
•11•38•4•1•Updated Jun 8, 2023Jun 8, 2023
afdb-shapemer-darkness
Public
Jupyter Notebook
•1•4•0•0•Updated Mar 15, 2023Mar 15, 2023
MomentLearn
Public
Jupyter Notebook
•0•0•0•0•Updated Mar 14, 2022Mar 14, 2022
archelon
Public
locality sensitive hashing implementation
Python
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MIT License
•0•1•0•0•Updated Oct 25, 2021Oct 25, 2021
geometricus_deep_learning
Public
Exploring geometric deep learning algorithms with rotation invariant moments for protein structures
Jupyter Notebook
•0•1•0•0•Updated Oct 19, 2021Oct 19, 2021
alphafold-structural-space
Public
Structural space exploration of AlphaFold DB
Jupyter Notebook
•3•12•0•0•Updated Oct 8, 2021Oct 8, 2021
pretrain-gnns
Public
Strategies for Pre-training Graph Neural Networks
Python
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MIT License
•162•0•0•0•Updated Aug 11, 2021Aug 11, 2021
TurtleTools.github.io
Public
GitHub pages repository for hosting documentation
HTML
•0•0•0•0•Updated Jul 28, 2021Jul 28, 2021
clemmys
Public
Matplotlib plotting utilities for proteins
Python
•0•1•0•0•Updated Apr 16, 2020Apr 16, 2020