Repositories list

• PRIMUS

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• valid

  Public
  Python

  •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• trial_emulations_genetics

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• finregistry-data

  Public
  FinRegistry data preprocessing scripts

  Python

  •

  MIT License

  •2•4•8•0•Updated Jan 3, 2025Jan 3, 2025

• ICCI

  Public
  This is an R package that calculates the Charlson Comorbidity Index (CCI) on longitudinal ICD data, using the R package `comorbidity`.

  R

  •

  Other

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• finregistry-xgboost

  Public
  Code for training xgboost models using the FinRegistry matrices as input

  Python

  •

  MIT License

  •0•0•1•0•Updated Nov 6, 2024Nov 6, 2024

• Finregistry_detailed_longitudinal_and_endpoint_generation

  Public
  Python

  •0•1•0•0•Updated Sep 26, 2024Sep 26, 2024

• glp1-bs-genetics

  Public
  R

  •0•0•0•0•Updated Sep 3, 2024Sep 3, 2024

• family-EHR-graphs

  Public
  Graph representation learning with GNNs for predicting disease risk from family EHRs

  machine-learningdeep-learninghealth+ 8pytorchmedicallstmehrelectronic-health-recordgraph-neural-networkspytorch-geometric+ 1

  Python

  •0•6•0•0•Updated May 26, 2024May 26, 2024

• parentalAIDs_T1D

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

• gnn_family_pedigree

  Public
  Python

  •0•1•0•0•Updated Mar 8, 2024Mar 8, 2024

• finregistry.github.io

  Public
  Documentation for FinRegistry

  CSS

  •

  GNU General Public License v3.0

  •1•0•2•0•Updated Dec 7, 2023Dec 7, 2023

• finregistry-matrices

  Public
  Scripts to generate endpoint, drug, and socioeconomic-demographic matrices in FinRegistry

  Python

  •

  MIT License

  •0•0•6•0•Updated Nov 15, 2023Nov 15, 2023

• Mosaic-loss-of-chromosome-X

  Public
  R

  •0•0•0•0•Updated Nov 14, 2023Nov 14, 2023

• Lifetime-Reproductive-Success

  Public
  R

  •0•0•0•0•Updated Nov 12, 2023Nov 12, 2023

• drugs-persistence-adherence

  Public
  Genetic and environmental determinants of drug purchasing behaviour

  R

  •1•0•0•0•Updated Oct 26, 2023Oct 26, 2023

• sddesktop

  Public
  Documentation for FinRegistry and CSC SD Desktop

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 7, 2023Sep 7, 2023

• rsv

  Public
  Identifying risk factors and creating a prediction model for severe RSV infection

  R

  •0•0•0•0•Updated Aug 29, 2023Aug 29, 2023

• seasonality

  Public
  Exploring the genetic component of seasonality in disease in Finland

  R

  •0•0•0•0•Updated Jul 24, 2023Jul 24, 2023

• COVID-19-vaccination-public

  Public
  Essential analysis code for the predictors of COVID-19 vaccination uptake study

  R

  •

  MIT License

  •1•0•0•0•Updated Jun 26, 2023Jun 26, 2023

• metadata

  Public
  lookup tables for variable codes

  R

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated May 3, 2023May 3, 2023

• gwasbot

  Public
  JavaScript

  •

  Mozilla Public License 2.0

  •1•2•0•0•Updated Apr 23, 2023Apr 23, 2023

• Sex-Chromosome-Aneuploidy_PheWAS

  Public
  R

  •0•0•0•0•Updated Mar 14, 2023Mar 14, 2023

• FinRegistry_pedigree

  Public
  R

  •1•0•0•0•Updated Dec 9, 2022Dec 9, 2022

• kela-kanta-reliability

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Nov 21, 2022Nov 21, 2022

• RNN

  Public
  Pytorch model and preprocessing for mortlaity prediction

  Python

  •1•0•0•0•Updated May 25, 2022May 25, 2022

• query_tool

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 26, 2022Apr 26, 2022

• Somatic_Mutations

  Public
  WDL

  •0•0•0•0•Updated Mar 19, 2022Mar 19, 2022

• dalys_code

  Public
  R

  •

  MIT License

  •1•3•0•0•Updated Jan 26, 2022Jan 26, 2022

• risteys-pipeline-poc

  Public
  Proof-of-concept for the refactored Risteys pipeline

  Python

  •0•1•0•0•Updated Dec 31, 2021Dec 31, 2021