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@reichlab The Reich Lab at UMass-Amherst

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    133 repositories

    • reichlab.github.io

      Public
      The website for the Reich Lab @ UMass-Amherst.
      HTML
      •
      Apache License 2.0
      •47•18•7•0•Updated Mar 1, 2025Mar 1, 2025

    • cladetime

      Public
      Python interface for accessing Nextstrain SARS-CoV-2 sequence and clade data
      Python
      •
      MIT License
      •1•6•5•0•Updated Feb 28, 2025Feb 28, 2025

    • decisions

      Public
      A public record of decisions made for lab projects
      HTML
      •
      The Unlicense
      •0•1•0•2•Updated Feb 28, 2025Feb 28, 2025

    • variant-nowcast-hub

      Public
      A repository to store COVID-19 variant nowcasts collected as a modeling hub.
      R
      •
      MIT License
      •12•15•8•3•Updated Feb 28, 2025Feb 28, 2025

    • variant-nowcast-hub-dashboard

      Public
      Dashboard pages and analyses for the US SARS-CoV-2 Variant Nowcast Hub
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•4•0•Updated Feb 28, 2025Feb 28, 2025

    • covidhub-dashboard

      Public
      Dashboard for the CDC's COVID-19 Forecast Hub
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • flusight-dashboard

      Public
      Dashboard for CDC's FluSight prediction exercise.
      Creative Commons Zero v1.0 Universal
      •3•0•1•0•Updated Feb 28, 2025Feb 28, 2025

    • flusight-dashboard-staging

      Public
      Staging version of flusight-dashboard -- used to demo updates
      Creative Commons Zero v1.0 Universal
      •3•0•0•0•Updated Feb 27, 2025Feb 27, 2025

    • jacques

      Public
      Just Another Conditional Quantile Estimator
      Jupyter Notebook
      •
      MIT License
      •1•0•3•1•Updated Feb 27, 2025Feb 27, 2025

    • FluSight-forecast-hub

      Public
      FluSight-forecast-hub fork for cloud onboarding
      R
      •
      MIT License
      •73•0•0•0•Updated Feb 26, 2025Feb 26, 2025

    • cdcgov-covid19-forecast-hub

      Public
      A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.
      R
      •
      Apache License 2.0
      •16•0•0•0•Updated Feb 26, 2025Feb 26, 2025

    • zoltr

      Public
      R
      •
      GNU General Public License v3.0
      •4•2•10•2•Updated Feb 26, 2025Feb 26, 2025

    • flu-metrocast

      Public
      Short-term forecasts for influenza at the city- and county-level
      R
      •
      MIT License
      •2•2•3•1•Updated Feb 25, 2025Feb 25, 2025

    • variant-nowcast-model-dev-retro

      Public
      Retrospective model dev for UMass models for variant-nowcast-hub
      R
      •
      MIT License
      •0•2•3•3•Updated Feb 20, 2025Feb 20, 2025

    • trendsEnsemble

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•5•0•Updated Feb 20, 2025Feb 20, 2025

    • operational-models

      Public
      Repository for automating runs of operational disease forecasting models.
      R
      •
      MIT License
      •0•0•2•0•Updated Feb 20, 2025Feb 20, 2025

    • container-utils

      Public
      Utility scripts for containerized apps.
      Shell
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • iddata

      Public
      Python module for accessing infectious disease data
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 19, 2025Feb 19, 2025

    • reichlab-utils

      Public
      Script to standardize permissions and branch settings for Reichlab repos
      Python
      •
      MIT License
      •0•0•0•2•Updated Feb 14, 2025Feb 14, 2025

    • sarimaTD

      Public
      sarimaTD R package: SARIMA Models with Transformations and Seasonal Differencing
      R
      •2•2•4•0•Updated Feb 6, 2025Feb 6, 2025

    • jacques-flu

      Public
      Using jacques method to forecast flu cases
      Jupyter Notebook
      •
      MIT License
      •0•0•2•0•Updated Jan 31, 2025Jan 31, 2025

    • flu-thief

      Public
      Influenza forecasting using the THieF (Temporal Hierarchical Forecasting) and FoReco (Forecast Reconciliation) methods
      0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • predtimechart

      Public
      JavaScript
      •
      MIT License
      •1•0•22•0•Updated Dec 16, 2024Dec 16, 2024

    • get-covid-clade-counts

      Public
      Create virus clade count data and save to an S3 Bucket using functionality from virus-clade-utils
      Python
      •
      MIT License
      •0•0•5•0•Updated Dec 9, 2024Dec 9, 2024

    • idmodels

      Public
      Infectious disease models in Python
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • flusion-experiments

      Public
      Influenza forecasting using data fusion
      Jupyter Notebook
      •
      MIT License
      •2•0•2•0•Updated Nov 27, 2024Nov 27, 2024

    • idforecastutils

      Public
      utility functions for various forecasting models, exercises, and rounds
      R
      •
      Other
      •0•0•8•1•Updated Nov 22, 2024Nov 22, 2024

    • covid19-forecast-hub

      Public
      Projections of COVID-19, in standardized format
      github-pagesanalyticsforecastscovid-19covid19covid-datavisualizationforecast-data
      Jupyter Notebook
      •
      Other
      •327•452•10•6•Updated Nov 21, 2024Nov 21, 2024

    • flusion-manuscript

      Public
      TeX
      •
      MIT License
      •0•1•0•0•Updated Nov 11, 2024Nov 11, 2024

    • hub-infrastructure-experiments

      Public
      experiments about hub infrastructure
      HTML
      •2•1•2•3•Updated Nov 4, 2024Nov 4, 2024