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Segfault on julia master during precompilation #868

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zickgraf opened this issue May 9, 2023 · 3 comments
Closed

Segfault on julia master during precompilation #868

zickgraf opened this issue May 9, 2023 · 3 comments

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@zickgraf
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zickgraf commented May 9, 2023

Bisected to e26b63cf41cff80783621ed193e794be5978be20 (I hope this is correct) from JuliaLang/julia#49556

               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.10.0-DEV.1233 (2023-05-06)
 _/ |\__'_|_|_|\__'_|  |  Commit e26b63cf41 (3 days old master)
|__/                   |

julia> using GAP
Precompiling GAP
  10 dependencies successfully precompiled in 7 seconds. 2 already precompiled.
  1 dependency had warnings during precompilation:
┌ GAP [c863536a-3901-11e9-33e7-d5cd0df7b904]
│  WARNING: could not import REPLCompletions.get_value into GAP
└  
 ┌───────┐   GAP 4.12.2 of 2022-12-18
 │  GAP  │   https://www.gap-system.org
 └───────┘   Architecture: x86_64-pc-linux-gnu-julia1.10-64-kv8
 Configuration:  gmp 6.2.1, Julia GC, Julia 1.10.0-DEV, readline
 Loading the library and packages ...

[57833] signal (11.1): Segmentation fault
in expression starting at REPL[1]:1
ELM_PLIST at /workspace/srcdir/gap-4.12.2/src/plist.h:203 [inlined]
DoOperationNArgs<2, 0, 0> at /workspace/srcdir/gap-4.12.2/src/opers.cc:1903 [inlined]
DoOperation2Args at /workspace/srcdir/gap-4.12.2/src/opers.cc:2005
EqObject at /workspace/srcdir/gap-4.12.2/src/ariths.c:550
EQ at /workspace/srcdir/gap-4.12.2/src/ariths.h:273 [inlined]
EvalNe at /workspace/srcdir/gap-4.12.2/src/exprs.c:281
EVAL_BOOL_EXPR at /workspace/srcdir/gap-4.12.2/src/exprs.h:128 [inlined]
ExecIf at /workspace/srcdir/gap-4.12.2/src/stats.c:221
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat6 at /workspace/srcdir/gap-4.12.2/src/stats.c:185
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
EXEC_CURR_FUNC at /workspace/srcdir/gap-4.12.2/src/stats.c:61
DoExecFunc at /workspace/srcdir/gap-4.12.2/src/funcs.c:468 [inlined]
DoExecFunc0args at /workspace/srcdir/gap-4.12.2/src/funcs.c:483
CALL_2ARGS at /workspace/srcdir/gap-4.12.2/src/calls.h:316 [inlined]
IntrFuncCallEnd at /workspace/srcdir/gap-4.12.2/src/intrprtr.c:398
EvalRef at /workspace/srcdir/gap-4.12.2/src/read.c:382
ReadCallVarAss at /workspace/srcdir/gap-4.12.2/src/read.c:889
ReadAtom at /workspace/srcdir/gap-4.12.2/src/read.c:1603
ReadFactor at /workspace/srcdir/gap-4.12.2/src/read.c:1674
ReadTerm at /workspace/srcdir/gap-4.12.2/src/read.c:1723
ReadAri at /workspace/srcdir/gap-4.12.2/src/read.c:1755
ReadRel at /workspace/srcdir/gap-4.12.2/src/read.c:1792
ReadAnd at /workspace/srcdir/gap-4.12.2/src/read.c:1829
ReadExpr at /workspace/srcdir/gap-4.12.2/src/read.c:1904
ReadEvalCommand at /workspace/srcdir/gap-4.12.2/src/read.c:2577
READ_INNER at /workspace/srcdir/gap-4.12.2/src/streams.c:291
FuncREAD at /workspace/srcdir/gap-4.12.2/src/streams.c:810
CALL_1ARGS at /workspace/srcdir/gap-4.12.2/src/calls.h:311 [inlined]
EvalOrExecCall at /workspace/srcdir/gap-4.12.2/src/funcs.c:147 [inlined]
EvalFunccall1args at /workspace/srcdir/gap-4.12.2/src/funcs.c:303
EVAL_EXPR at /workspace/srcdir/gap-4.12.2/src/exprs.h:98 [inlined]
EvalUnknownBool at /workspace/srcdir/gap-4.12.2/src/exprs.c:101
EVAL_BOOL_EXPR at /workspace/srcdir/gap-4.12.2/src/exprs.h:128 [inlined]
EvalNot at /workspace/srcdir/gap-4.12.2/src/exprs.c:212
EVAL_BOOL_EXPR at /workspace/srcdir/gap-4.12.2/src/exprs.h:128 [inlined]
ExecIf at /workspace/srcdir/gap-4.12.2/src/stats.c:221
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat4 at /workspace/srcdir/gap-4.12.2/src/stats.c:175
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
EXEC_CURR_FUNC at /workspace/srcdir/gap-4.12.2/src/stats.c:61
DoExecFunc at /workspace/srcdir/gap-4.12.2/src/funcs.c:468 [inlined]
DoExecFunc1args at /workspace/srcdir/gap-4.12.2/src/funcs.c:489
CALL_1ARGS at /workspace/srcdir/gap-4.12.2/src/calls.h:311 [inlined]
CallNArgs<1> at /workspace/srcdir/gap-4.12.2/src/opers.cc:1826 [inlined]
DoOperationNArgs<1, 0, 0> at /workspace/srcdir/gap-4.12.2/src/opers.cc:1986 [inlined]
DoOperation1Args at /workspace/srcdir/gap-4.12.2/src/opers.cc:2000
CALL_1ARGS at /workspace/srcdir/gap-4.12.2/src/calls.h:311 [inlined]
EvalOrExecCall at /workspace/srcdir/gap-4.12.2/src/funcs.c:147 [inlined]
ExecProccall1args at /workspace/srcdir/gap-4.12.2/src/funcs.c:218
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat4 at /workspace/srcdir/gap-4.12.2/src/stats.c:175
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat4 at /workspace/srcdir/gap-4.12.2/src/stats.c:175
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
EXEC_CURR_FUNC at /workspace/srcdir/gap-4.12.2/src/stats.c:61
DoExecFunc at /workspace/srcdir/gap-4.12.2/src/funcs.c:468 [inlined]
DoExecFunc1args at /workspace/srcdir/gap-4.12.2/src/funcs.c:489
CALL_2ARGS at /workspace/srcdir/gap-4.12.2/src/calls.h:316 [inlined]
EvalOrExecCall at /workspace/srcdir/gap-4.12.2/src/funcs.c:150 [inlined]
ExecProccall2args at /workspace/srcdir/gap-4.12.2/src/funcs.c:224
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat at /workspace/srcdir/gap-4.12.2/src/stats.c:160
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecForHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:402 [inlined]
ExecFor at /workspace/srcdir/gap-4.12.2/src/stats.c:457
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat7 at /workspace/srcdir/gap-4.12.2/src/stats.c:190
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecForRangeHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:538 [inlined]
ExecForRange at /workspace/srcdir/gap-4.12.2/src/stats.c:550
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat at /workspace/srcdir/gap-4.12.2/src/stats.c:160
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat7 at /workspace/srcdir/gap-4.12.2/src/stats.c:190
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
EXEC_CURR_FUNC at /workspace/srcdir/gap-4.12.2/src/stats.c:61
DoExecFunc at /workspace/srcdir/gap-4.12.2/src/funcs.c:468 [inlined]
DoExecFunc1args at /workspace/srcdir/gap-4.12.2/src/funcs.c:489
CALL_3ARGS at /workspace/srcdir/gap-4.12.2/src/calls.h:321 [inlined]
EvalOrExecCall at /workspace/srcdir/gap-4.12.2/src/funcs.c:153 [inlined]
EvalFunccall3args at /workspace/srcdir/gap-4.12.2/src/funcs.c:313
EVAL_EXPR at /workspace/srcdir/gap-4.12.2/src/exprs.h:98 [inlined]
EvalNe at /workspace/srcdir/gap-4.12.2/src/exprs.c:275
EVAL_BOOL_EXPR at /workspace/srcdir/gap-4.12.2/src/exprs.h:128 [inlined]
ExecIf at /workspace/srcdir/gap-4.12.2/src/stats.c:221
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecForHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:402 [inlined]
ExecFor at /workspace/srcdir/gap-4.12.2/src/stats.c:457
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat5 at /workspace/srcdir/gap-4.12.2/src/stats.c:180
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat at /workspace/srcdir/gap-4.12.2/src/stats.c:160
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat7 at /workspace/srcdir/gap-4.12.2/src/stats.c:190
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
EXEC_CURR_FUNC at /workspace/srcdir/gap-4.12.2/src/stats.c:61
DoExecFunc at /workspace/srcdir/gap-4.12.2/src/funcs.c:468 [inlined]
DoExecFunc0args at /workspace/srcdir/gap-4.12.2/src/funcs.c:483
CALL_0ARGS at /workspace/srcdir/gap-4.12.2/src/calls.h:306 [inlined]
EvalOrExecCall at /workspace/srcdir/gap-4.12.2/src/funcs.c:144 [inlined]
ExecProccall0args at /workspace/srcdir/gap-4.12.2/src/funcs.c:212
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
ExecSeqStatHelper at /workspace/srcdir/gap-4.12.2/src/stats.c:147 [inlined]
ExecSeqStat4 at /workspace/srcdir/gap-4.12.2/src/stats.c:175
EXEC_STAT at /workspace/srcdir/gap-4.12.2/src/stats.c:55 [inlined]
EXEC_CURR_FUNC at /workspace/srcdir/gap-4.12.2/src/stats.c:61
DoExecFunc at /workspace/srcdir/gap-4.12.2/src/funcs.c:468 [inlined]
DoExecFunc1args at /workspace/srcdir/gap-4.12.2/src/funcs.c:489
CALL_1ARGS at /workspace/srcdir/gap-4.12.2/src/calls.h:311 [inlined]
IntrFuncCallEnd at /workspace/srcdir/gap-4.12.2/src/intrprtr.c:397
EvalRef at /workspace/srcdir/gap-4.12.2/src/read.c:382
ReadCallVarAss at /workspace/srcdir/gap-4.12.2/src/read.c:889
ReadAtom at /workspace/srcdir/gap-4.12.2/src/read.c:1603
ReadFactor at /workspace/srcdir/gap-4.12.2/src/read.c:1674
ReadTerm at /workspace/srcdir/gap-4.12.2/src/read.c:1723
ReadAri at /workspace/srcdir/gap-4.12.2/src/read.c:1755
ReadRel at /workspace/srcdir/gap-4.12.2/src/read.c:1792
ReadAnd at /workspace/srcdir/gap-4.12.2/src/read.c:1829
ReadExpr at /workspace/srcdir/gap-4.12.2/src/read.c:1904
ReadEvalCommand at /workspace/srcdir/gap-4.12.2/src/read.c:2577
READ_GAP_ROOT at /workspace/srcdir/gap-4.12.2/src/streams.c:409
initialize at /home/gap/.julia/packages/GAP/iWfJi/src/GAP.jl:153
#4 at /home/gap/.julia/packages/GAP/iWfJi/src/GAP.jl:298 [inlined]
withenv at ./env.jl:235
__init__ at /home/gap/.julia/packages/GAP/iWfJi/src/GAP.jl:297
jfptr___init___490 at /home/gap/.julia/compiled/v1.10/GAP/YqHod_IfvkQ.so (unknown line)
jl_apply at /tmp/julia/src/julia.h:1958 [inlined]
jl_module_run_initializer at /tmp/julia/src/toplevel.c:76
run_module_init at ./loading.jl:1087
register_restored_modules at ./loading.jl:1075
_include_from_serialized at ./loading.jl:1020
_require_search_from_serialized at ./loading.jl:1481
_require at ./loading.jl:1820
_require_prelocked at ./loading.jl:1694
macro expansion at ./loading.jl:1680 [inlined]
macro expansion at ./lock.jl:267 [inlined]
require at ./loading.jl:1643
jfptr_require_56922 at /tmp/julia/usr/lib/julia/sys.so (unknown line)
jl_apply at /tmp/julia/src/julia.h:1958 [inlined]
call_require at /tmp/julia/src/toplevel.c:467 [inlined]
eval_import_path at /tmp/julia/src/toplevel.c:504
jl_toplevel_eval_flex at /tmp/julia/src/toplevel.c:729
jl_toplevel_eval_flex at /tmp/julia/src/toplevel.c:854
ijl_toplevel_eval_in at /tmp/julia/src/toplevel.c:970
eval at ./boot.jl:385 [inlined]
eval_user_input at /tmp/julia/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:150
repl_backend_loop at /tmp/julia/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:246
#start_repl_backend#46 at /tmp/julia/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:231
start_repl_backend at /tmp/julia/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:228
#run_repl#59 at /tmp/julia/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:376
run_repl at /tmp/julia/usr/share/julia/stdlib/v1.10/REPL/src/REPL.jl:362
jfptr_run_repl_63007 at /tmp/julia/usr/lib/julia/sys.so (unknown line)
#992 at ./client.jl:421
jfptr_YY.992_58274 at /tmp/julia/usr/lib/julia/sys.so (unknown line)
jl_apply at /tmp/julia/src/julia.h:1958 [inlined]
jl_f__call_latest at /tmp/julia/src/builtins.c:812
#invokelatest#2 at ./essentials.jl:863 [inlined]
invokelatest at ./essentials.jl:860 [inlined]
run_main_repl at ./client.jl:405
exec_options at ./client.jl:322
_start at ./client.jl:541
jfptr__start_58281 at /tmp/julia/usr/lib/julia/sys.so (unknown line)
jl_apply at /tmp/julia/src/julia.h:1958 [inlined]
true_main at /tmp/julia/src/jlapi.c:582
jl_repl_entrypoint at /tmp/julia/src/jlapi.c:734
main at /tmp/julia/cli/loader_exe.c:58
unknown function (ip: 0x7f10e41abd8f)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
_start at ./julia (unknown line)
Allocations: 3324631 (Pool: 3321467; Big: 3164); GC: 7
Segmentation fault
@benlorenz
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benlorenz commented May 9, 2023 •
edited
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Some GAP releated jll packages might need to be rebuilt for these changes on julia master. I just prepared a new libjulia_jll for this, then @fingolfin can continue with the other jlls.

@benlorenz
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This should be fixed on GAP.jl master now (via several jll rebuilds and #869).

@zickgraf
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Confirmed, thank you @benlorenz and @fingolfin!

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