From 245558eb870540083710430e68f0063c128642c9 Mon Sep 17 00:00:00 2001 From: Oliver Schwengers Date: Fri, 13 Aug 2021 11:29:23 +0200 Subject: [PATCH] use UniProtKB constant --- bakta/io/insdc.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/bakta/io/insdc.py b/bakta/io/insdc.py index 892651a8..562d812e 100644 --- a/bakta/io/insdc.py +++ b/bakta/io/insdc.py @@ -116,11 +116,11 @@ def write_insdc(genome, features, genbank_output_path, embl_output_path): if('ips' in feature): if('uniref100_id' in feature['ips']): ips_subject_id = feature['ips']['uniref100_id'] - inference.append(f'similar to AA sequence:UniProtKB:{ips_subject_id}') + inference.append(f'similar to AA sequence:{bc.DB_XREF_UNIPROTKB}:{ips_subject_id}') if('psc' in feature): if('uniref90_id' in feature['psc']): psc_subject_id = feature['psc']['uniref90_id'] - inference.append(f'similar to AA sequence:UniProtKB:{psc_subject_id}') + inference.append(f'similar to AA sequence:{bc.DB_XREF_UNIPROTKB}:{psc_subject_id}') qualifiers['inference'] = inference elif(feature['type'] == bc.FEATURE_T_RNA): # TODO: Position anticodon