diff --git a/bakta/utils.py b/bakta/utils.py index 1bcc8f70..c0b78523 100644 --- a/bakta/utils.py +++ b/bakta/utils.py @@ -40,7 +40,7 @@ def print_version(self): DEPENDENCY_HMMSEARCH = (Version(3, 3, 1), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('hmmsearch', '-h'), ['--skip-cds', '--skip-sorf']) DEPENDENCY_DIAMOND = (Version(2, 0, 10), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('diamond', 'help'), ['--skip-cds', '--skip-sorf']) DEPENDENCY_BLASTN = (Version(2, 7, 1), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('blastn', '-version'), ['--skip-ori']) -DEPENDENCY_AMRFINDERPLUS = (Version(3, 10), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('amrfinder', '--version'), ['--skip-cds']) +DEPENDENCY_AMRFINDERPLUS = (Version(3, 10, 16), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('amrfinder', '--version'), ['--skip-cds']) INSDC_ID_REGEX = re.compile(r'[^A-Za-z\d_.:*#-]') # https://www.ncbi.nlm.nih.gov/WebSub/html/help/fasta.html diff --git a/environment.yml b/environment.yml index 9537a0b6..7fb5b991 100644 --- a/environment.yml +++ b/environment.yml @@ -16,4 +16,4 @@ dependencies: - hmmer>=3.3.1 - diamond>=2.0.11 - blast>=2.7.1 - - ncbi-amrfinderplus>=3.10.14 \ No newline at end of file + - ncbi-amrfinderplus>=3.10.16 \ No newline at end of file