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Merge pull request #49 from pangenome/tweaks

Pull request merge
AndreaGuarracinopushed 5 commits to main • 6f24b34…aae3e24 • 
12 days ago

revert

AndreaGuarracinopushed 1 commit to tweaks • 542ec86…28734b7 • 
12 days ago

Update dependencies in Cargo.lock to latest versions

AndreaGuarracinopushed 33 commits to tweaks • 2b6e0b0…542ec86 • 
14 days ago

Merge pull request #47 from bkille/parse-by-digit

Pull request merge
AndreaGuarracinopushed 2 commits to main • 2999852…6f24b34 • 
16 days ago

Merge pull request #46 from pangenome/fix_query_trans

Pull request merge
AndreaGuarracinopushed 2 commits to main • cb622c6…2999852 • 
29 days ago

fix visited_range initialization

AndreaGuarracinocreated fix_query_trans • f0d77bf • 
29 days ago

Merge branch 'main' into less_memory_partition

AndreaGuarracinopushed 3 commits to less_memory_partition • 3089553…7f015b0 • 
on Feb 2

Merge pull request #45 from pangenome/less_memory_partition

Pull request merge
AndreaGuarracinopushed 4 commits to main • a620f08…cb622c6 • 
on Feb 2

fix tessts

AndreaGuarracinopushed 1 commit to less_memory_partition • 079c2bc…3089553 • 
on Feb 1

typos

AndreaGuarracinopushed 1 commit to less_memory_partition • 1b14504…079c2bc • 
on Feb 1

do not store CIGAR ops while partitioning

AndreaGuarracinocreated less_memory_partition • 1b14504 • 
on Feb 1

Merge pull request #44 from pangenome/avoid_short_chunks

Pull request merge
AndreaGuarracinopushed 2 commits to main • 6d5db05…a620f08 • 
on Jan 30

max_depth as u16 to reduce memory usage

AndreaGuarracinopushed 2 commits to avoid_short_chunks • 0486875…a33132d • 
on Jan 30

Merge pull request #43 from pangenome/avoid_short_chunks

Pull request merge
AndreaGuarracinopushed 7 commits to main • e43543d…6d5db05 • 
on Jan 27

min_mask_proximity parameter

AndreaGuarracinopushed 2 commits to avoid_short_chunks • a0a3b72…0486875 • 
on Jan 26

fix log

AndreaGuarracinopushed 1 commit to avoid_short_chunks • 02a8069…a0a3b72 • 
on Jan 26

all i32

AndreaGuarracinopushed 2 commits to avoid_short_chunks • 8861045…02a8069 • 
on Jan 26

avoid too smal transitive ranges

AndreaGuarracinocreated avoid_short_chunks • 8861045 • 
on Jan 26

Merge pull request #42 from pangenome/avoid_too_close_trans_queries

Pull request merge
AndreaGuarracinopushed 2 commits to main • 82e84a0…e43543d • 
on Jan 24

Add min_distance_between_ranges parameter to query functions for bett…

AndreaGuarracinocreated avoid_too_close_trans_queries • 8fe6097 • 
on Jan 24

Merge pull request #41 from pangenome/min_trans_query_len

Pull request merge
AndreaGuarracinopushed 2 commits to main • d41b472…82e84a0 • 
on Jan 24

Add min_interval_size parameter to query functions and adjust logic f…

AndreaGuarracinocreated min_trans_query_len • 241a3bc • 
on Jan 24

Merge pull request #40 from pangenome/more_log

Pull request merge
AndreaGuarracinopushed 8 commits to main • 1524898…d41b472 • 
on Jan 12

Improve y-axis breaks calculation for small max_length values in crea…

AndreaGuarracinopushed 1 commit to more_log • 80f2c28…05f6bcb • 
on Jan 12

Change max_depth type from u32 to u16 across query functions

AndreaGuarracinopushed 1 commit to more_log • 1ab1775…80f2c28 • 
on Jan 12

Refactor max_depth parameter to be non-optional across query functions

AndreaGuarracinopushed 1 commit to more_log • 8dbcebe…1ab1775 • 
on Jan 12

update version

AndreaGuarracinopushed 1 commit to more_log • 35fac1b…8dbcebe • 
on Jan 12

Add max_depth parameter to query functions for limiting recursion depth

AndreaGuarracinopushed 1 commit to more_log • 5784cb3…35fac1b • 
on Jan 12

remove useless variable

AndreaGuarracinopushed 1 commit to more_log • 36fe4a7…5784cb3 • 
on Jan 12

logging info for while querying

AndreaGuarracinocreated more_log • 36fe4a7 • 
on Jan 12