Name	Protein identifier	Contig id	Start	Stop	Strand	Gene symbol	Sequence name	Scope	Element type	Element subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference sequence	% Identity to reference sequence	Alignment length	Accession of closest sequence	Name of closest sequence	HMM id	HMM description
20231115_sample03	NA	contig_160	1407	2048	-	qnrB6	quinolone resistance pentapeptide repeat protein QnrB6	core	AMR	AMR	QUINOLONE	QUINOLONE	ALLELEX	214	214	100.00	100.00	214	WP_001749994.1	quinolone resistance pentapeptide repeat protein QnrB6	NA	NA
20231115_sample03	NA	contig_169	152	1009	-	blaTEM-1	broad-spectrum class A beta-lactamase TEM-1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEX	286	286	100.00	100.00	286	WP_000027057.1	broad-spectrum class A beta-lactamase TEM-1	NA	NA
20231115_sample03	NA	contig_170	1162	1974	+	aph(3')-Ia	aminoglycoside O-phosphotransferase APH(3')-Ia	core	AMR	AMR	AMINOGLYCOSIDE	KANAMYCIN	EXACTX	271	271	100.00	100.00	271	WP_012695470.1	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	NA
20231115_sample03	NA	contig_4	5830	6381	+	aac(6')-Ib-cr5	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	core	AMR	AMR	AMINOGLYCOSIDE/QUINOLONE	AMIKACIN/KANAMYCIN/QUINOLONE/TOBRAMYCIN	ALLELEX	184	184	100.00	100.00	184	WP_063840321.1	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA
20231115_sample03	NA	contig_4	6481	6930	+	arr-3	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	core	AMR	AMR	RIFAMYCIN	RIFAMYCIN	EXACTX	150	150	100.00	100.00	150	WP_001749986.1	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA
20231115_sample03	NA	contig_4	7066	7329	+	dfrA27	trimethoprim-resistant dihydrofolate reductase DfrA27	core	AMR	AMR	TRIMETHOPRIM	TRIMETHOPRIM	PARTIALX	88	157	56.05	100.00	88	WP_001749985.1	trimethoprim-resistant dihydrofolate reductase DfrA27	NA	NA
20231115_sample03	NA	contig_4	7721	8563	+	aadA16	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	EXACTX	281	281	100.00	100.00	281	WP_001749984.1	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16	NA	NA
20231115_sample03	NA	contig_4	8683	9027	+	qacEdelta1	quaternary ammonium compound efflux SMR transporter QacE delta 1	core	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	ALLELEX	115	115	100.00	100.00	115	WP_000679427.1	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA
20231115_sample03	NA	contig_4	9024	9860	+	sul1	sulfonamide-resistant dihydropteroate synthase Sul1	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	EXACTX	279	279	100.00	100.00	279	WP_000259031.1	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA
20231115_sample03	NA	contig_68	1187	2383	+	tet(A)	tetracycline efflux MFS transporter Tet(A)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	EXACTX	399	399	100.00	100.00	399	WP_012579085.1	tetracycline efflux MFS transporter Tet(A)	NA	NA