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Advice for phasing reads of a triploid plant species? #81

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zhaotao1987 opened this issue Jan 9, 2022 · 0 comments
Open

Advice for phasing reads of a triploid plant species? #81

zhaotao1987 opened this issue Jan 9, 2022 · 0 comments

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@zhaotao1987
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Hello, I wondered if Longshot suitable for phasing HiFi reads from a AAB-type triploid plant species? Right now it's running under the settings of longshot -r $i -y 20 -O reads.$i.bam --bam ccs.map2ref.sorted.bam --ref ref.fasta --out longshot.call.$i.VCF. I would like to hear your opinion and suggestions. Thanks a lot! Best, Tao

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