diff --git a/examples/bet_bids_func_subworkflow.py b/examples/bet_bids_func_subworkflow.py index d0d7ff8..5ad33e1 100644 --- a/examples/bet_bids_func_subworkflow.py +++ b/examples/bet_bids_func_subworkflow.py @@ -35,7 +35,7 @@ def bet_wf(wf, **kwargs): if __name__ == '__main__': ROOT_DIR = os.path.dirname(os.getcwd()) - input_dir = os.path.join(ROOT_DIR, 'data_in/bids') # path where the bids data is located + input_dir = os.path.join(ROOT_DIR, 'data_in/pumi-unittest') # path where the bids data is located output_dir = os.path.join(ROOT_DIR, 'data_out') # path where the folder 'BET' will be created for the results of this script working_dir = os.path.join(ROOT_DIR, diff --git a/examples/bet_bids_subworkflow.py b/examples/bet_bids_subworkflow.py index f628711..cfff03c 100644 --- a/examples/bet_bids_subworkflow.py +++ b/examples/bet_bids_subworkflow.py @@ -6,7 +6,7 @@ if __name__ == '__main__': ROOT_DIR = os.path.dirname(os.getcwd()) - input_dir = os.path.join(ROOT_DIR, 'data_in/bids') # path where the bids data is located + input_dir = os.path.join(ROOT_DIR, 'data_in/pumi-unittest') # path where the bids data is located output_dir = os.path.join(ROOT_DIR, 'data_out') # path where the folder 'BET' will be created for the results of this script working_dir = os.path.join(ROOT_DIR, diff --git a/examples/defacing_ex_bids.py b/examples/defacing_ex_bids.py index 30e83c5..169f0ae 100644 --- a/examples/defacing_ex_bids.py +++ b/examples/defacing_ex_bids.py @@ -6,7 +6,7 @@ ROOT_DIR = os.path.dirname(os.getcwd()) -input_dir = os.path.join(ROOT_DIR, 'data_in/bids') # path where the bids data is located +input_dir = os.path.join(ROOT_DIR, 'data_in/pumi-unittest') # path where the bids data is located output_dir = os.path.join(ROOT_DIR, 'data_out') # path where the folder 'BET' will be created for the results of this script working_dir = os.path.join(ROOT_DIR, diff --git a/examples/despiking_bids_ex.py b/examples/despiking_bids_ex.py index c6dda3d..b955ebc 100644 --- a/examples/despiking_bids_ex.py +++ b/examples/despiking_bids_ex.py @@ -4,7 +4,7 @@ ROOT_DIR = os.path.dirname(os.getcwd()) -input_dir = os.path.join(ROOT_DIR, 'data_in/bids') # path where the bids data is located +input_dir = os.path.join(ROOT_DIR, 'data_in/pumi-unittest') # path where the bids data is located output_dir = os.path.join(ROOT_DIR, 'data_out') # path where the folder 'BET' will be created for the results of this script working_dir = os.path.join(ROOT_DIR, diff --git a/examples/ex_bids_pipeline.py b/examples/ex_bids_pipeline.py index a1c53ae..6cf2129 100644 --- a/examples/ex_bids_pipeline.py +++ b/examples/ex_bids_pipeline.py @@ -3,7 +3,7 @@ from nipype import Function # experiment specific parameters: -input_dir = 'data_in/bids' # place where the bids data is located +input_dir = 'data_in/pumi-unittest' # place where the bids data is located output_dir = 'data_out' # place where the folder 'BET' will be created for the results of this script working_dir = 'data_out' # place where the folder 'bet_iter_wf' will be created for the workflow diff --git a/examples/ex_compcor.py b/examples/ex_compcor.py index 4340145..f2fbd4e 100644 --- a/examples/ex_compcor.py +++ b/examples/ex_compcor.py @@ -8,7 +8,7 @@ ROOT_DIR = os.path.dirname(os.getcwd()) -input_dir = os.path.join(ROOT_DIR, 'data_in/bids') # path where the bids data is located +input_dir = os.path.join(ROOT_DIR, 'data_in/pumi-unittest') # path where the bids data is located output_dir = os.path.join(ROOT_DIR, 'data_out') # path for the folder with the results of this script working_dir = os.path.join(ROOT_DIR, 'data_out') # path for the workflow folder diff --git a/examples/ex_func_proc.py b/examples/ex_func_proc.py index 2ed5306..c79cb40 100644 --- a/examples/ex_func_proc.py +++ b/examples/ex_func_proc.py @@ -10,7 +10,7 @@ ROOT_DIR = os.path.dirname(os.getcwd()) -input_dir = os.path.join(ROOT_DIR, 'data_in/bids') # path where the bids data is located +input_dir = os.path.join(ROOT_DIR, 'data_in/pumi-unittest') # path where the bids data is located output_dir = os.path.join(ROOT_DIR, 'data_out') # path for the folder with the results of this script working_dir = os.path.join(ROOT_DIR, 'data_out') # path for the workflow folder diff --git a/examples/ex_func_to_anat_bids.py b/examples/ex_func_to_anat_bids.py index 8c7d4f9..e598095 100644 --- a/examples/ex_func_to_anat_bids.py +++ b/examples/ex_func_to_anat_bids.py @@ -7,7 +7,7 @@ # experiment specific parameters: ROOT_DIR = os.path.dirname(os.getcwd()) -input_dir = os.path.join(ROOT_DIR, 'data_in/bids') # place where the bids data is located +input_dir = os.path.join(ROOT_DIR, 'data_in/pumi-unittest') # place where the bids data is located output_dir = os.path.join(ROOT_DIR, 'data_out') # place where the folder will be created for the results of this script working_dir = os.path.join(ROOT_DIR, 'data_out') # place where the folder will be created for the workflow diff --git a/examples/ex_tmpfilt.py b/examples/ex_tmpfilt.py index abd7cd5..20e366d 100644 --- a/examples/ex_tmpfilt.py +++ b/examples/ex_tmpfilt.py @@ -10,7 +10,7 @@ ROOT_DIR = os.path.dirname(os.getcwd()) -input_dir = os.path.join(ROOT_DIR, 'data_in/bids') # path where the bids data is located +input_dir = os.path.join(ROOT_DIR, 'data_in/pumi-unittest') # path where the bids data is located output_dir = os.path.join(ROOT_DIR, 'data_out') # path for the folder with the results of this script working_dir = os.path.join(ROOT_DIR, 'data_out') # path for the workflow folder diff --git a/examples/rpn_preproc.py b/examples/rpn_preproc.py index 80b17b7..895ba89 100644 --- a/examples/rpn_preproc.py +++ b/examples/rpn_preproc.py @@ -11,7 +11,7 @@ ROOT_DIR = os.path.dirname(os.getcwd()) -input_dir = os.path.join(ROOT_DIR, 'data_in/bids') # path where the bids data is located +input_dir = os.path.join(ROOT_DIR, 'data_in/pumi-unittest') # path where the bids data is located output_dir = os.path.join(ROOT_DIR, 'data_out') # path for the folder with the results of this script working_dir = os.path.join(ROOT_DIR, 'data_out') # path for the workflow folder