emdfile version mismatch

[sezelt]

It seems that in emdfile the RootedNode class was removed in v0.0.9, while it is still imported (and perhaps used?) in py4DSTEM. This seems to be causing the PR build tests to be failing for several open PRs (#456, #455, #441). Currently PyPI is at 0.0.9 and so pip installations of py4DSTEM are broken, but the conda-forge release is one version behind and is working for the moment.

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/home/runner/work/py4DSTEM/py4DSTEM/py4DSTEM/__init__.py", line 17, in <module>
    from py4DSTEM.classes import (
  File "/home/runner/work/py4DSTEM/py4DSTEM/py4DSTEM/classes/__init__.py", line 5, in <module>
    from py4DSTEM.classes.datacube import DataCube
  File "/home/runner/work/py4DSTEM/py4DSTEM/py4DSTEM/classes/datacube.py", line 6, in <module>
    from emdfile import Array,RootedNode
ImportError: cannot import name 'RootedNode' from 'emdfile' (/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/emdfile/__init__.py)
Error: Process completed with exit code 1.

I am not sure how hard it would be to cut RootedNode out of py4DSTEM and do a hotfix release, versus reverting it in emdfile...

[bsavitzky]

Yup, should have synced this last emdfile version update yesterday with the associated changes in py4DSTEM. Because I didn't we're getting failed builds in the flaker GH action. PR 459 fixes this - once it's pulled in the other 3 active PRs should pull from dev and the issue should resolve

[bsavitzky]

Fixed in PR #459