From 1dbe63f72f1cd8befb76d0b8e7b4f284e7852404 Mon Sep 17 00:00:00 2001 From: Du Phan Date: Wed, 13 Apr 2022 12:06:42 -0400 Subject: [PATCH] Bump to 0.9.2 (#1391) * Enhance LocScaleReparam noncenter dependency * fix lint * Use id in the first place * change tree_multimap to tree_map * Fix lint * Fix lint * Fix failing tests due to FutureWarning tree_multimap * Also support ndarray in LocScaleReparam * Bump to version 0.9.2 --- examples/annotation.py | 2 +- examples/ar2.py | 2 +- examples/baseball.py | 2 +- examples/bnn.py | 2 +- examples/covtype.py | 2 +- examples/funnel.py | 2 +- examples/gaussian_shells.py | 2 +- examples/gp.py | 2 +- examples/hmm.py | 2 +- examples/holt_winters.py | 2 +- examples/horseshoe_regression.py | 2 +- examples/minipyro.py | 2 +- examples/mortality.py | 2 +- examples/neutra.py | 2 +- examples/ode.py | 2 +- examples/prodlda.py | 2 +- examples/proportion_test.py | 2 +- examples/sparse_regression.py | 2 +- examples/stochastic_volatility.py | 2 +- examples/thompson_sampling.py | 2 +- examples/ucbadmit.py | 2 +- examples/vae.py | 2 +- notebooks/source/bad_posterior_geometry.ipynb | 2 +- notebooks/source/bayesian_hierarchical_linear_regression.ipynb | 2 +- notebooks/source/bayesian_hierarchical_stacking.ipynb | 2 +- notebooks/source/bayesian_imputation.ipynb | 2 +- notebooks/source/bayesian_regression.ipynb | 2 +- notebooks/source/logistic_regression.ipynb | 2 +- notebooks/source/model_rendering.ipynb | 2 +- notebooks/source/ordinal_regression.ipynb | 2 +- notebooks/source/time_series_forecasting.ipynb | 2 +- numpyro/version.py | 2 +- 32 files changed, 32 insertions(+), 32 deletions(-) diff --git a/examples/annotation.py b/examples/annotation.py index 00330b4b2..c18a376a9 100644 --- a/examples/annotation.py +++ b/examples/annotation.py @@ -351,7 +351,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Bayesian Models of Annotation") parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/ar2.py b/examples/ar2.py index 6fdaa1af9..a22f93f76 100644 --- a/examples/ar2.py +++ b/examples/ar2.py @@ -114,7 +114,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="AR2 example") parser.add_argument("--num-data", nargs="?", default=142, type=int) parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int) diff --git a/examples/baseball.py b/examples/baseball.py index 0ac90c382..ed9039368 100644 --- a/examples/baseball.py +++ b/examples/baseball.py @@ -210,7 +210,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Baseball batting average using MCMC") parser.add_argument("-n", "--num-samples", nargs="?", default=3000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1500, type=int) diff --git a/examples/bnn.py b/examples/bnn.py index 497720044..5e1ab5d47 100644 --- a/examples/bnn.py +++ b/examples/bnn.py @@ -160,7 +160,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Bayesian neural network example") parser.add_argument("-n", "--num-samples", nargs="?", default=2000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/covtype.py b/examples/covtype.py index c945194e7..5aa7d7ccf 100644 --- a/examples/covtype.py +++ b/examples/covtype.py @@ -206,7 +206,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="parse args") parser.add_argument( "-n", "--num-samples", default=1000, type=int, help="number of samples" diff --git a/examples/funnel.py b/examples/funnel.py index f37b27b3a..b0f1ce68e 100644 --- a/examples/funnel.py +++ b/examples/funnel.py @@ -139,7 +139,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser( description="Non-centered reparameterization example" ) diff --git a/examples/gaussian_shells.py b/examples/gaussian_shells.py index 258f6b49b..8dd570d78 100644 --- a/examples/gaussian_shells.py +++ b/examples/gaussian_shells.py @@ -120,7 +120,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Nested sampler for Gaussian shells") parser.add_argument("-n", "--num-samples", nargs="?", default=10000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/gp.py b/examples/gp.py index 87784c7c8..f4420e71c 100644 --- a/examples/gp.py +++ b/examples/gp.py @@ -170,7 +170,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Gaussian Process example") parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/hmm.py b/examples/hmm.py index 8cfc895cd..7bc68245e 100644 --- a/examples/hmm.py +++ b/examples/hmm.py @@ -263,7 +263,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Semi-supervised Hidden Markov Model") parser.add_argument("--num-categories", default=3, type=int) parser.add_argument("--num-words", default=10, type=int) diff --git a/examples/holt_winters.py b/examples/holt_winters.py index 326535e1a..d3e322798 100644 --- a/examples/holt_winters.py +++ b/examples/holt_winters.py @@ -180,7 +180,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Holt-Winters") parser.add_argument("--T", nargs="?", default=6, type=int) parser.add_argument("--future", nargs="?", default=1, type=int) diff --git a/examples/horseshoe_regression.py b/examples/horseshoe_regression.py index 5a805bc90..f67c5d411 100644 --- a/examples/horseshoe_regression.py +++ b/examples/horseshoe_regression.py @@ -162,7 +162,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Horseshoe regression example") parser.add_argument("-n", "--num-samples", nargs="?", default=2000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/minipyro.py b/examples/minipyro.py index c6efaf2b9..ac2b77a85 100644 --- a/examples/minipyro.py +++ b/examples/minipyro.py @@ -58,7 +58,7 @@ def body_fn(i, val): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Mini Pyro demo") parser.add_argument("-f", "--full-pyro", action="store_true", default=False) parser.add_argument("-n", "--num-steps", default=1001, type=int) diff --git a/examples/mortality.py b/examples/mortality.py index 67cbaff76..7e8ca379a 100644 --- a/examples/mortality.py +++ b/examples/mortality.py @@ -220,7 +220,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Mortality regression model") parser.add_argument("-n", "--num-samples", nargs="?", default=500, type=int) diff --git a/examples/neutra.py b/examples/neutra.py index c8d5ff590..cbce0ca35 100644 --- a/examples/neutra.py +++ b/examples/neutra.py @@ -197,7 +197,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="NeuTra HMC") parser.add_argument("-n", "--num-samples", nargs="?", default=4000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/ode.py b/examples/ode.py index cc0f004b9..d51be5f3f 100644 --- a/examples/ode.py +++ b/examples/ode.py @@ -117,7 +117,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Predator-Prey Model") parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int) parser.add_argument("--num-warmup", nargs="?", default=1000, type=int) diff --git a/examples/prodlda.py b/examples/prodlda.py index 23c88c99d..a6b6aa5cc 100644 --- a/examples/prodlda.py +++ b/examples/prodlda.py @@ -314,7 +314,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser( description="Probabilistic topic modelling with Flax and Haiku" ) diff --git a/examples/proportion_test.py b/examples/proportion_test.py index b67c82012..73308fb02 100644 --- a/examples/proportion_test.py +++ b/examples/proportion_test.py @@ -160,7 +160,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Testing whether ") parser.add_argument("-n", "--num-samples", nargs="?", default=500, type=int) parser.add_argument("--num-warmup", nargs="?", default=1500, type=int) diff --git a/examples/sparse_regression.py b/examples/sparse_regression.py index e3be755ce..c816253fe 100644 --- a/examples/sparse_regression.py +++ b/examples/sparse_regression.py @@ -384,7 +384,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Gaussian Process example") parser.add_argument("-n", "--num-samples", nargs="?", default=1000, type=int) parser.add_argument("--num-warmup", nargs="?", default=500, type=int) diff --git a/examples/stochastic_volatility.py b/examples/stochastic_volatility.py index 719988fa5..9e41be93e 100644 --- a/examples/stochastic_volatility.py +++ b/examples/stochastic_volatility.py @@ -122,7 +122,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Stochastic Volatility Model") parser.add_argument("-n", "--num-samples", nargs="?", default=600, type=int) parser.add_argument("--num-warmup", nargs="?", default=600, type=int) diff --git a/examples/thompson_sampling.py b/examples/thompson_sampling.py index d326b20f3..09e05a63a 100644 --- a/examples/thompson_sampling.py +++ b/examples/thompson_sampling.py @@ -294,7 +294,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="Thompson sampling example") parser.add_argument( "--num-random", nargs="?", default=2, type=int, help="number of random draws" diff --git a/examples/ucbadmit.py b/examples/ucbadmit.py index df00da503..c13be38c2 100644 --- a/examples/ucbadmit.py +++ b/examples/ucbadmit.py @@ -151,7 +151,7 @@ def main(args): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser( description="UCBadmit gender discrimination using HMC" ) diff --git a/examples/vae.py b/examples/vae.py index 36f9424ca..d7fa3f9bd 100644 --- a/examples/vae.py +++ b/examples/vae.py @@ -160,7 +160,7 @@ def reconstruct_img(epoch, rng_key): if __name__ == "__main__": - assert numpyro.__version__.startswith("0.9.1") + assert numpyro.__version__.startswith("0.9.2") parser = argparse.ArgumentParser(description="parse args") parser.add_argument( "-n", "--num-epochs", default=15, type=int, help="number of training epochs" diff --git a/notebooks/source/bad_posterior_geometry.ipynb b/notebooks/source/bad_posterior_geometry.ipynb index fbfbb5852..4513c84a4 100644 --- a/notebooks/source/bad_posterior_geometry.ipynb +++ b/notebooks/source/bad_posterior_geometry.ipynb @@ -50,7 +50,7 @@ "\n", "from numpyro.infer import MCMC, NUTS\n", "\n", - "assert numpyro.__version__.startswith(\"0.9.1\")\n", + "assert numpyro.__version__.startswith(\"0.9.2\")\n", "\n", "# NB: replace cpu by gpu to run this notebook on gpu\n", "numpyro.set_platform(\"cpu\")" diff --git a/notebooks/source/bayesian_hierarchical_linear_regression.ipynb b/notebooks/source/bayesian_hierarchical_linear_regression.ipynb index a497f96da..d11ce1108 100644 --- a/notebooks/source/bayesian_hierarchical_linear_regression.ipynb +++ b/notebooks/source/bayesian_hierarchical_linear_regression.ipynb @@ -244,7 +244,7 @@ "import numpyro.distributions as dist\n", "from jax import random\n", "\n", - "assert numpyro.__version__.startswith(\"0.9.1\")" + "assert numpyro.__version__.startswith(\"0.9.2\")" ] }, { diff --git a/notebooks/source/bayesian_hierarchical_stacking.ipynb b/notebooks/source/bayesian_hierarchical_stacking.ipynb index 5f95e237c..badf34ee3 100644 --- a/notebooks/source/bayesian_hierarchical_stacking.ipynb +++ b/notebooks/source/bayesian_hierarchical_stacking.ipynb @@ -96,7 +96,7 @@ " set_matplotlib_formats(\"svg\")\n", "\n", "numpyro.set_host_device_count(4)\n", - "assert numpyro.__version__.startswith(\"0.9.1\")" + "assert numpyro.__version__.startswith(\"0.9.2\")" ] }, { diff --git a/notebooks/source/bayesian_imputation.ipynb b/notebooks/source/bayesian_imputation.ipynb index 075653731..59f20993d 100644 --- a/notebooks/source/bayesian_imputation.ipynb +++ b/notebooks/source/bayesian_imputation.ipynb @@ -55,7 +55,7 @@ "if \"NUMPYRO_SPHINXBUILD\" in os.environ:\n", " set_matplotlib_formats(\"svg\")\n", "\n", - "assert numpyro.__version__.startswith(\"0.9.1\")" + "assert numpyro.__version__.startswith(\"0.9.2\")" ] }, { diff --git a/notebooks/source/bayesian_regression.ipynb b/notebooks/source/bayesian_regression.ipynb index 26198795e..e8038cfe4 100644 --- a/notebooks/source/bayesian_regression.ipynb +++ b/notebooks/source/bayesian_regression.ipynb @@ -95,7 +95,7 @@ "if \"NUMPYRO_SPHINXBUILD\" in os.environ:\n", " set_matplotlib_formats(\"svg\")\n", "\n", - "assert numpyro.__version__.startswith(\"0.9.1\")" + "assert numpyro.__version__.startswith(\"0.9.2\")" ], "execution_count": 2, "outputs": [] diff --git a/notebooks/source/logistic_regression.ipynb b/notebooks/source/logistic_regression.ipynb index d3e5d680c..9287373c8 100644 --- a/notebooks/source/logistic_regression.ipynb +++ b/notebooks/source/logistic_regression.ipynb @@ -41,7 +41,7 @@ "from numpyro.examples.datasets import COVTYPE, load_dataset\n", "from numpyro.infer import HMC, MCMC, NUTS\n", "\n", - "assert numpyro.__version__.startswith(\"0.9.1\")\n", + "assert numpyro.__version__.startswith(\"0.9.2\")\n", "\n", "# NB: replace gpu by cpu to run this notebook in cpu\n", "numpyro.set_platform(\"gpu\")" diff --git a/notebooks/source/model_rendering.ipynb b/notebooks/source/model_rendering.ipynb index 2d017a81d..46ebbf48e 100644 --- a/notebooks/source/model_rendering.ipynb +++ b/notebooks/source/model_rendering.ipynb @@ -37,7 +37,7 @@ "import numpyro.distributions as dist\n", "import numpyro.distributions.constraints as constraints\n", "\n", - "assert numpyro.__version__.startswith(\"0.9.1\")" + "assert numpyro.__version__.startswith(\"0.9.2\")" ] }, { diff --git a/notebooks/source/ordinal_regression.ipynb b/notebooks/source/ordinal_regression.ipynb index 0a5615e44..617d9fa8b 100644 --- a/notebooks/source/ordinal_regression.ipynb +++ b/notebooks/source/ordinal_regression.ipynb @@ -53,7 +53,7 @@ "import pandas as pd\n", "import seaborn as sns\n", "\n", - "assert numpyro.__version__.startswith(\"0.9.1\")" + "assert numpyro.__version__.startswith(\"0.9.2\")" ] }, { diff --git a/notebooks/source/time_series_forecasting.ipynb b/notebooks/source/time_series_forecasting.ipynb index 0e029d579..12c7a1e3a 100644 --- a/notebooks/source/time_series_forecasting.ipynb +++ b/notebooks/source/time_series_forecasting.ipynb @@ -48,7 +48,7 @@ " set_matplotlib_formats(\"svg\")\n", "\n", "numpyro.set_host_device_count(4)\n", - "assert numpyro.__version__.startswith(\"0.9.1\")" + "assert numpyro.__version__.startswith(\"0.9.2\")" ] }, { diff --git a/numpyro/version.py b/numpyro/version.py index 131546c84..d3bd3f40f 100644 --- a/numpyro/version.py +++ b/numpyro/version.py @@ -1,4 +1,4 @@ # Copyright Contributors to the Pyro project. # SPDX-License-Identifier: Apache-2.0 -__version__ = "0.9.1" +__version__ = "0.9.2"