Installation problem

[ghost]

Hi,

I tried installing riboHMM using
sudo python setup.py install
but it always throws me error like following

Error compiling Cython file:
------------------------------------------------------------
...
    return x_final, optimized

@cython.boundscheck(False)
@cython.wraparound(False)
@cython.nonecheck(False)
cdef tuple alpha_func_grad(np.ndarray[np.float64_t, ndim=2] x, list data, list states, list frames, np.ndarray[np.float64_t, ndim=3] rescale, np.ndarray[np.float64_t, ndim=2] beta):
    ^
------------------------------------------------------------

ribohmm.pyx:1197:5: Function signature does not match previous declaration

Error compiling Cython file:
------------------------------------------------------------
...
    return func, gradient

@cython.boundscheck(False)
@cython.wraparound(False)
@cython.nonecheck(False)
cdef tuple alpha_func_grad_hess(np.ndarray[np.float64_t, ndim=2] x, list data, list states, list frames, np.ndarray[np.float64_t, ndim=3] rescale, np.ndarray[np.float64_t, ndim=2] beta):
    ^
------------------------------------------------------------

ribohmm.pyx:1265:5: Function signature does not match previous declaration
building 'ribohmm' extension
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I. -I/usr/include/python2.7 -c ribohmm.c -o build/temp.linux-x86_64-2.7/ribohmm.o
ribohmm.c:1:2: error: #error Do not use this file, it is the result of a failed Cython compilation.
 #error Do not use this file, it is the result of a failed Cython compilation.
  ^
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1

Any guidance in installing the riboHMM would be highly appreciable.
Thanks in advance

[mhassan]

Were you able to resolve this? am stuck in the same lane

[ghost]

No........I tried even updating cython but still no use. As the paper published out recently I expect the author respond to the issues as soon as possible.

[rajanil]

Sorry, I seem to have missed this issue. The riboHMM release isn't complete yet; I expect to have a release within the week and will provide a full README on how to install, etc.

[mhassan]

Is the complete riboHMM out?

[mjoppich]

Any new info on when you can release?

Just curious :) (and leaving a reply so I don't miss it)

[nonomono]

I am getting a 'gcc' failed with exit 1 error could you please let me know what am I supposed to do to correct this issue, I have tried installing 'gcc' and 'python-dev' but they seem to be fine

error: command 'gcc' failed with exit status 1
(ribohmm) rr@rr-S2400SC:/proj/riboHMM$ sudo apt-get install python-dev
[sudo] password for rr:
Reading package lists... Done
Building dependency tree
Reading state information... Done
python-dev is already the newest version (2.7.11-1).
0 upgraded, 0 newly installed, 0 to remove and 185 not upgraded.
**(ribohmm) rr@rr-S2400SC:/proj/riboHMM$ python setup.py build_ext --inplace
running build_ext
skipping 'seq.c' Cython extension (up-to-date)
running build_ext
skipping 'ribohmm.c' Cython extension (up-to-date)
building 'ribohmm' extension
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/rr/anaconda2/envs/ribohmm/lib/python2.7/site-packages/numpy/core/include -I. -I/home/rr/anaconda2/envs/ribohmm/include/python2.7 -c ribohmm.c -o build/temp.linux-x86_64-2.7/ribohmm.o
In file included from /home/rr/anaconda2/envs/ribohmm/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
from /home/rr/anaconda2/envs/ribohmm/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /home/rr/anaconda2/envs/ribohmm/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from ribohmm.c:274:
/home/rr/anaconda2/envs/ribohmm/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by "
^
ribohmm.c:888:25: error: expected identifier or ‘(’ before ‘;’ token
PyBoolObject _restrict;
^
In file included from /home/rr/anaconda2/envs/ribohmm/include/python2.7/Python.h:80:0,
from ribohmm.c:4:
ribohmm.c: In function ‘pyx_pf_7ribohmm_10Transition___cinit’:
ribohmm.c:18332:43: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)_pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:774:24: note: in definition of macro ‘Py_DECREF’
--((PyObject)(op))->ob_refcnt != 0)
^
ribohmm.c:18332:3: note: in expansion of macro ‘**Pyx_DECREF’
__Pyx_DECREF(((PyObject _)__pyx_v_self->restrict));
^
ribohmm.c:18332:43: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)_pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:115:47: note: in definition of macro ‘Py_TYPE’
#define Py_TYPE(ob) (((PyObject)(ob))->ob_type)
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:777:9: note: in expansion of macro ‘_Py_Dealloc’
_Py_Dealloc((PyObject _)(op));
^
ribohmm.c:1085:27: note: in expansion of macro ‘Py_DECREF’
#define __Pyx_DECREF(r) Py_DECREF(r)
^
ribohmm.c:18332:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject *)__pyx_v_self->restrict));
^
ribohmm.c:18332:43: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)__pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:764:45: note: in definition of macro ‘_Py_Dealloc’
(_Py_TYPE(op)->tp_dealloc)((PyObject _)(op)))
^
ribohmm.c:1085:27: note: in expansion of macro ‘Py_DECREF’
#define __Pyx_DECREF(r) Py_DECREF(r)
^
ribohmm.c:18332:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject *)__pyx_v_self->restrict));
^
ribohmm.c:18333:17: error: expected identifier before ‘restrict’
__pyx_v_self->restrict = ((PyBoolObject *)Py_True);
^
ribohmm.c: In function ‘__pyx_f_7ribohmm_10Transition_update’:
ribohmm.c:18696:64: error: expected identifier before ‘restrict’
__pyx_t_1 = __Pyx_PyObject_IsTrue(((PyObject *)__pyx_v_self->restrict)); if (
^
In file included from /home/rr/anaconda2/envs/ribohmm/include/python2.7/Python.h:80:0,
from ribohmm.c:4:
ribohmm.c:19005:47: error: expected identifier before ‘restrict’
__Pyx_INCREF(((PyObject *)_pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:769:18: note: in definition of macro ‘Py_INCREF’
((PyObject)(op))->ob_refcnt++)
^
ribohmm.c:19005:7: note: in expansion of macro ‘__Pyx_INCREF’
__Pyx_INCREF(((PyObject *)__pyx_v_self->restrict));
^
In file included from /home/rr/anaconda2/envs/ribohmm/include/python2.7/Python.h:99:0,
from ribohmm.c:4:
ribohmm.c:19007:76: error: expected identifier before ‘restrict’
yTuple_SET_ITEM(__pyx_t_4, 4+__pyx_t_13, ((PyObject *)__pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/tupleobject.h:54:75: note: in definition of macro ‘PyTuple_SET_ITEM’
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject )(op))->ob_item[i] = v)
^
ribohmm.c:19141:70: error: expected identifier before ‘restrict’
__pyx_t_1 = __Pyx_PyObject_IsTrue(((PyObject )__pyx_v_self->restrict));
^
In file included from /home/rr/anaconda2/envs/ribohmm/include/python2.7/Python.h:80:0,
from ribohmm.c:4:
ribohmm.c: In function ‘__pyx_pf_7ribohmm_10Transition_2__reduce’:
ribohmm.c:19308:43: error: expected identifier before ‘restrict’
**Pyx_INCREF(((PyObject _)_pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:769:18: note: in definition of macro ‘Py_INCREF’
((PyObject)(op))->ob_refcnt++)
^
ribohmm.c:19308:3: note: in expansion of macro ‘__Pyx_INCREF’
__Pyx_INCREF(((PyObject *)__pyx_v_self->restrict));
^
In file included from /home/rr/anaconda2/envs/ribohmm/include/python2.7/Python.h:99:0,
from ribohmm.c:4:
ribohmm.c:19310:61: error: expected identifier before ‘restrict’
PyTuple_SET_ITEM(__pyx_t_2, 1, ((PyObject )__pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/tupleobject.h:54:75: note: in definition of macro ‘PyTuple_SET_ITEM’
#define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject )(op))->ob_item[i] = v)
^
In file included from /home/rr/anaconda2/envs/ribohmm/include/python2.7/Python.h:80:0,
from ribohmm.c:4:
ribohmm.c: In function ‘__pyx_pf_7ribohmm_10Transition_8restrict___get’:
ribohmm.c:19514:43: error: expected identifier before ‘restrict’
**Pyx_INCREF(((PyObject _)_pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:769:18: note: in definition of macro ‘Py_INCREF’
((PyObject)(op))->ob_refcnt++)
^
ribohmm.c:19514:3: note: in expansion of macro ‘__Pyx_INCREF’
__Pyx_INCREF(((PyObject )__pyx_v_self->restrict));
^
ribohmm.c:19515:40: error: expected identifier before ‘restrict’
__pyx_r = ((PyObject )__pyx_v_self->restrict);
^
In file included from /home/rr/anaconda2/envs/ribohmm/include/python2.7/Python.h:80:0,
from ribohmm.c:4:
ribohmm.c: In function ‘__pyx_pf_7ribohmm_10Transition_8restrict_2__set’:
ribohmm.c:19548:43: error: expected identifier before ‘restrict’
**Pyx_DECREF(((PyObject _)_pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:774:24: note: in definition of macro ‘Py_DECREF’
--((PyObject)(op))->ob_refcnt != 0)
^
ribohmm.c:19548:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject _)__pyx_v_self->restrict));
^
ribohmm.c:19548:43: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)_pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:115:47: note: in definition of macro ‘Py_TYPE’
#define Py_TYPE(ob) (((PyObject)(ob))->ob_type)
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:777:9: note: in expansion of macro ‘_Py_Dealloc’
_Py_Dealloc((PyObject _)(op));
^
ribohmm.c:1085:27: note: in expansion of macro ‘Py_DECREF’
#define __Pyx_DECREF(r) Py_DECREF(r)
^
ribohmm.c:19548:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject *)__pyx_v_self->restrict));
^
ribohmm.c:19548:43: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)__pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:764:45: note: in definition of macro ‘_Py_Dealloc’
(_Py_TYPE(op)->tp_dealloc)((PyObject *)(op)))
^
ribohmm.c:1085:27: note: in expansion of macro ‘Py_DECREF’
#define __Pyx_DECREF(r) Py_DECREF(r)
^
ribohmm.c:19548:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject )__pyx_v_self->restrict));
^
ribohmm.c:19549:17: error: expected identifier before ‘restrict’
__pyx_v_self->restrict = ((PyBoolObject )__pyx_t_1);
^
In file included from /home/rr/anaconda2/envs/ribohmm/include/python2.7/Python.h:80:0,
from ribohmm.c:4:
ribohmm.c: In function ‘__pyx_pf_7ribohmm_10Transition_8restrict_4__del’:
ribohmm.c:19584:43: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject _)_pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:774:24: note: in definition of macro ‘Py_DECREF’
--((PyObject)(op))->ob_refcnt != 0)
^
ribohmm.c:19584:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject _)__pyx_v_self->restrict));
^
ribohmm.c:19584:43: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)_pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:115:47: note: in definition of macro ‘Py_TYPE’
#define Py_TYPE(ob) (((PyObject)(ob))->ob_type)
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:777:9: note: in expansion of macro ‘_Py_Dealloc’
_Py_Dealloc((PyObject _)(op));
^
ribohmm.c:1085:27: note: in expansion of macro ‘Py_DECREF’
#define __Pyx_DECREF(r) Py_DECREF(r)
^
ribohmm.c:19584:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject *)__pyx_v_self->restrict));
^
ribohmm.c:19584:43: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)__pyx_v_self->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:764:45: note: in definition of macro ‘_Py_Dealloc’
(_Py_TYPE(op)->tp_dealloc)((PyObject _)(op)))
^
ribohmm.c:1085:27: note: in expansion of macro ‘Py_DECREF’
#define __Pyx_DECREF(r) Py_DECREF(r)
^
ribohmm.c:19584:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject *)__pyx_v_self->restrict));
^
ribohmm.c:19585:17: error: expected identifier before ‘restrict’
__pyx_v_self->restrict = ((PyBoolObject *)Py_None);
^
In file included from /home/rr/anaconda2/envs/ribohmm/include/python2.7/Python.h:80:0,
from ribohmm.c:4:
ribohmm.c: In function ‘__pyx_pf_7ribohmm_4rebuild_Transition’:
ribohmm.c:19812:40: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)_pyx_v_t->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:774:24: note: in definition of macro ‘Py_DECREF’
--((PyObject)(op))->ob_refcnt != 0)
^
ribohmm.c:19812:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject _)__pyx_v_t->restrict));
^
ribohmm.c:19812:40: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)_pyx_v_t->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:115:47: note: in definition of macro ‘Py_TYPE’
#define Py_TYPE(ob) (((PyObject)(ob))->ob_type)
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:777:9: note: in expansion of macro ‘_Py_Dealloc’
_Py_Dealloc((PyObject _)(op));
^
ribohmm.c:1085:27: note: in expansion of macro ‘Py_DECREF’
#define __Pyx_DECREF(r) Py_DECREF(r)
^
ribohmm.c:19812:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject *)__pyx_v_t->restrict));
^
ribohmm.c:19812:40: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)__pyx_v_t->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:764:45: note: in definition of macro ‘_Py_Dealloc’
(_Py_TYPE(op)->tp_dealloc)((PyObject _)(op)))
^
ribohmm.c:1085:27: note: in expansion of macro ‘Py_DECREF’
#define __Pyx_DECREF(r) Py_DECREF(r)
^
ribohmm.c:19812:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject *)__pyx_v_t->restrict));
^
ribohmm.c:19813:14: error: expected identifier before ‘restrict’
__pyx_v_t->restrict = ((PyBoolObject *)__pyx_t_1);
^
In file included from /home/rr/anaconda2/envs/ribohmm/include/python2.7/Python.h:80:0,
from ribohmm.c:4:
ribohmm.c: In function ‘__pyx_pf_7ribohmm_14learn_parameters’:
ribohmm.c:46962:49: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)_pyx_v_transition->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:774:24: note: in definition of macro ‘Py_DECREF’
--((PyObject)(op))->ob_refcnt != 0)
^
ribohmm.c:46962:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject _)__pyx_v_transition->restrict));
^
ribohmm.c:46962:49: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)_pyx_v_transition->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:115:47: note: in definition of macro ‘Py_TYPE’
#define Py_TYPE(ob) (((PyObject)(ob))->ob_type)
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:777:9: note: in expansion of macro ‘_Py_Dealloc’
_Py_Dealloc((PyObject _)(op));
^
ribohmm.c:1085:27: note: in expansion of macro ‘Py_DECREF’
#define __Pyx_DECREF(r) Py_DECREF(r)
^
ribohmm.c:46962:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject *)__pyx_v_transition->restrict));
^
ribohmm.c:46962:49: error: expected identifier before ‘restrict’
__Pyx_DECREF(((PyObject *)__pyx_v_transition->restrict));
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:764:45: note: in definition of macro ‘_Py_Dealloc’
(_Py_TYPE(op)->tp_dealloc)((PyObject _)(op)))
^
ribohmm.c:1085:27: note: in expansion of macro ‘Py_DECREF’
#define __Pyx_DECREF(r) Py_DECREF(r)
^
ribohmm.c:46962:3: note: in expansion of macro ‘__Pyx_DECREF’
__Pyx_DECREF(((PyObject *)__pyx_v_transition->restrict));
^
ribohmm.c:46963:23: error: expected identifier before ‘restrict’
__pyx_v_transition->restrict = ((PyBoolObject *)Py_False);
^
ribohmm.c: In function ‘__pyx_tp_new_7ribohmm_Transition’:
ribohmm.c:51711:6: error: expected identifier before ‘restrict’
p->restrict = ((PyBoolObject *)Py_None); Py_INCREF(Py_None);
^
In file included from /home/rr/anaconda2/envs/ribohmm/include/python2.7/Python.h:80:0,
from ribohmm.c:4:
ribohmm.c: In function ‘__pyx_tp_dealloc_7ribohmm_Transition’:
ribohmm.c:51728:15: error: expected identifier before ‘restrict’
Py_CLEAR(p->restrict);
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:816:13: note: in definition of macro ‘Py_CLEAR’
if (op) {
^
ribohmm.c:51728:15: error: expected identifier before ‘restrict’
Py_CLEAR(p->restrict);
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:817:46: note: in definition of macro ‘Py_CLEAR’
PyObject *_py_tmp = (PyObject )(op);
^
ribohmm.c:51728:15: error: expected identifier before ‘restrict’
Py_CLEAR(p->restrict);
^
/home/rr/anaconda2/envs/ribohmm/include/python2.7/object.h:818:14: note: in definition of macro ‘Py_CLEAR’
(op) = NULL;
^
ribohmm.c: In function ‘__pyx_tp_traverse_7ribohmm_Transition’:
ribohmm.c:51737:10: error: expected identifier before ‘restrict’
if (p->restrict) {
^
ribohmm.c:51738:29: error: expected identifier before ‘restrict’
e = (v)(((PyObject)p->restrict), a); if (e) return e;
^
ribohmm.c: In function ‘_pyx_tp_clear_7ribohmm_Transition’:
ribohmm.c:51752:24: error: expected identifier before ‘restrict’
tmp = ((PyObject)p->restrict);
^
ribohmm.c:51753:6: error: expected identifier before ‘restrict’
p->restrict = ((PyBoolObject )Py_None); Py_INCREF(Py_None);
^
In file included from /home/rr/anaconda2/envs/ribohmm/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27:0,
from /home/rr/anaconda2/envs/ribohmm/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from ribohmm.c:274:
ribohmm.c: At top level:
/home/rr/anaconda2/envs/ribohmm/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1448:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
error: command 'gcc' failed with exit status 1
(ribohmm) rr@rr-S2400SC:~/proj/riboHMM$ sudo apt-get install gcc
Reading package lists... Done
Building dependency tree
Reading state information... Done
gcc is already the newest version (4:5.3.1-1ubuntu1).
gcc set to manually installed.
0 upgraded, 0 newly installed, 0 to remove and 185 not upgraded.

[nonomono]

My package list:
(ribohmm) rr@rr-S2400SC:~/proj/riboHMM$ conda list

packages in environment at /home/rr/anaconda2/envs/ribohmm:

_nb_ext_conf 0.2.0 py27_0
alabaster 0.7.8 py27_0
anaconda-client 1.4.0 py27_0
anaconda custom py27_0
anaconda-navigator 1.2.1 py27_0
argcomplete 1.0.0 py27_1
astropy 1.2.1 np111py27_0
babel 2.3.3 py27_0
backports 1.0 py27_0
backports_abc 0.4 py27_0
beautifulsoup4 4.4.1 py27_0
bcftools 1.3.1 0 bioconda
htslib 1.3.1 1 bioconda
pysam 0.9.1 py27_1 bioconda
samtools 1.3.1 4 bioconda
bitarray 0.8.1 py27_0
blaze 0.10.1 py27_0
bokeh 0.12.0 py27_0
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