From 98abe003710b98a8d8b205da21431529a62b73c0 Mon Sep 17 00:00:00 2001
From: Ajay Thorve <ajaythorve1994@gmail.com>
Date: Tue, 24 Jan 2023 09:45:49 -0800
Subject: [PATCH 01/15] add dependencies for docs generation

---
 conda/environments/all_cuda-115_arch-x86_64.yaml | 8 ++++++++
 dependencies.yaml                                | 9 +++++++++
 2 files changed, 17 insertions(+)

diff --git a/conda/environments/all_cuda-115_arch-x86_64.yaml b/conda/environments/all_cuda-115_arch-x86_64.yaml
index f5ed5e8a1c..3ccedc4000 100644
--- a/conda/environments/all_cuda-115_arch-x86_64.yaml
+++ b/conda/environments/all_cuda-115_arch-x86_64.yaml
@@ -25,6 +25,8 @@ dependencies:
 - gcc_linux-64=9.*
 - hdbscan
 - hypothesis>=6.0,<7
+- ipykernel
+- ipython
 - joblib>=0.11
 - libcublas-dev>=11.7.3.1,<=11.7.4.6
 - libcublas>=11.7.3.1,<=11.7.4.6
@@ -41,10 +43,12 @@ dependencies:
 - libraft-distance=23.02.*
 - libraft-headers=23.02.*
 - libraft-nn=23.02.*
+- nbsphinx
 - ninja
 - nltk
 - numpydoc
 - pip
+- pydata-sphinx-theme
 - pylibraft=23.02.*
 - pytest
 - pytest-cases
@@ -52,11 +56,15 @@ dependencies:
 - pytest-xdist
 - python>=3.8,<3.10
 - raft-dask=23.02.*
+- recommonmark
 - rmm=23.02.*
 - scikit-build>=0.13.1
 - scikit-learn=0.24
 - seaborn
+- sklearn
 - sparse
+- sphinx
+- sphinx-copybutton
 - sphinx-markdown-tables
 - statsmodels
 - sysroot_linux-64==2.17
diff --git a/dependencies.yaml b/dependencies.yaml
index 8bf42f9536..7fd4c16771 100644
--- a/dependencies.yaml
+++ b/dependencies.yaml
@@ -180,6 +180,15 @@ dependencies:
     common:
       - output_types: [conda, requirements]
         packages:
+          - ipython
+          - ipykernel
+          - nbsphinx
+          - numpydoc
+          - pydata-sphinx-theme
+          - recommonmark
+          - sklearn
+          - sphinx
+          - sphinx-copybutton
           - sphinx-markdown-tables
       - output_types: conda
         packages:

From bfe0817b8ac02f47fbf1ac2d971460c99cdb1656 Mon Sep 17 00:00:00 2001
From: Ajay Thorve <ajaythorve1994@gmail.com>
Date: Tue, 24 Jan 2023 11:02:34 -0800
Subject: [PATCH 02/15] update cppdocs generation file with static values
 instead of CMAKE vars

---
 ci/release/update-version.sh |  3 +++
 cpp/Doxyfile.in              | 24 ++++++++++--------------
 2 files changed, 13 insertions(+), 14 deletions(-)

diff --git a/ci/release/update-version.sh b/ci/release/update-version.sh
index dca5b31dd2..3768cc0012 100755
--- a/ci/release/update-version.sh
+++ b/ci/release/update-version.sh
@@ -41,6 +41,9 @@ sed_runner 's/'"branch-.*\/RAPIDS.cmake"'/'"branch-${NEXT_SHORT_TAG}\/RAPIDS.cma
 sed_runner 's/version = .*/version = '"'${NEXT_SHORT_TAG}'"'/g' docs/source/conf.py
 sed_runner 's/release = .*/release = '"'${NEXT_FULL_TAG}'"'/g' docs/source/conf.py
 
+# Update project_number (RAPIDS_VERSION) in the CPP doxygen file
+sed_runner 's/PROJECT_NUMBER         = .*/PROJECT_NUMBER         = '"'${NEXT_SHORT_TAG}'"'/g' Doxyfile.in
+
 for FILE in dependencies.yaml conda/environments/*.yaml; do
    sed_runner "s/cudf=${CURRENT_SHORT_TAG}/cudf=${NEXT_SHORT_TAG}/g" ${FILE};
    sed_runner "s/rmm=${CURRENT_SHORT_TAG}/rmm=${NEXT_SHORT_TAG}/g" ${FILE};
diff --git a/cpp/Doxyfile.in b/cpp/Doxyfile.in
index 14d0f6fbb5..09fbac37c0 100644
--- a/cpp/Doxyfile.in
+++ b/cpp/Doxyfile.in
@@ -38,7 +38,7 @@ PROJECT_NAME           = "cuML C++ API"
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = @CUML_VERSION@
+PROJECT_NUMBER         = '23.02'
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a
@@ -58,7 +58,7 @@ PROJECT_LOGO           =
 # entered, it will be relative to the location where doxygen was started. If
 # left blank the current directory will be used.
 
-OUTPUT_DIRECTORY       = @CMAKE_CURRENT_BINARY_DIR@
+OUTPUT_DIRECTORY       =
 
 # If the CREATE_SUBDIRS tag is set to YES then doxygen will create 4096 sub-
 # directories (in 2 levels) under the output directory of each output format and
@@ -737,7 +737,7 @@ WARN_NO_PARAMDOC       = YES
 # a warning is encountered.
 # The default value is: NO.
 
-WARN_AS_ERROR          = YES
+WARN_AS_ERROR          = NO
 
 # The WARN_FORMAT tag determines the format of the warning messages that doxygen
 # can produce. The string should contain the $file, $line, and $text tags, which
@@ -765,9 +765,9 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = @CMAKE_CURRENT_SOURCE_DIR@/include \
-                         @CMAKE_CURRENT_SOURCE_DIR@/src \
-                         @CMAKE_CURRENT_SOURCE_DIR@/src_prims
+INPUT                  = include \
+                         src \
+                         src_prims
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -866,11 +866,7 @@ EXAMPLE_RECURSIVE      = NO
 # that contain images that are to be included in the documentation (see the
 # \image command).
 
-# IMAGE_PATH             = @CMAKE_CURRENT_SOURCE_DIR@/doxygen/images
-
-# temporarily using cmake_current_source_dir for image path since we don't have images,
-# comment the above whenever images are needed in the doxygen/images folder
-IMAGE_PATH             = @CMAKE_CURRENT_SOURCE_DIR@/
+IMAGE_PATH             =
 
 # The INPUT_FILTER tag can be used to specify a program that doxygen should
 # invoke to filter for each input file. Doxygen will invoke the filter program
@@ -1082,7 +1078,7 @@ HTML_FILE_EXTENSION    = .html
 # of the possible markers and block names see the documentation.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_HEADER            = @CMAKE_CURRENT_SOURCE_DIR@/header.html
+HTML_HEADER            = header.html
 
 # The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each
 # generated HTML page. If the tag is left blank doxygen will generate a standard
@@ -2126,7 +2122,7 @@ HIDE_UNDOC_RELATIONS   = YES
 # set to NO
 # The default value is: YES.
 
-HAVE_DOT               = @DOXYGEN_DOT_FOUND@
+HAVE_DOT               = YES
 
 # The DOT_NUM_THREADS specifies the number of dot invocations doxygen is allowed
 # to run in parallel. When set to 0 doxygen will base this on the number of
@@ -2306,7 +2302,7 @@ INTERACTIVE_SVG        = NO
 # found. If left blank, it is assumed the dot tool can be found in the path.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
-DOT_PATH               = @DOXYGEN_DOT_EXECUTABLE@
+DOT_PATH               =
 
 # The DOTFILE_DIRS tag can be used to specify one or more directories that
 # contain dot files that are included in the documentation (see the \dotfile

From 9f6f0a3ecb7b16ad49506d84ee43f8e28076c91e Mon Sep 17 00:00:00 2001
From: Ajay Thorve <ajaythorve1994@gmail.com>
Date: Tue, 24 Jan 2023 11:11:44 -0800
Subject: [PATCH 03/15] doc -> docs for consistency across repos

---
 conda/environments/all_cuda-115_arch-x86_64.yaml |  1 -
 dependencies.yaml                                | 12 +++++++++---
 2 files changed, 9 insertions(+), 4 deletions(-)

diff --git a/conda/environments/all_cuda-115_arch-x86_64.yaml b/conda/environments/all_cuda-115_arch-x86_64.yaml
index 3ccedc4000..5932f70679 100644
--- a/conda/environments/all_cuda-115_arch-x86_64.yaml
+++ b/conda/environments/all_cuda-115_arch-x86_64.yaml
@@ -61,7 +61,6 @@ dependencies:
 - scikit-build>=0.13.1
 - scikit-learn=0.24
 - seaborn
-- sklearn
 - sparse
 - sphinx
 - sphinx-copybutton
diff --git a/dependencies.yaml b/dependencies.yaml
index 7fd4c16771..eb9e3f67e7 100644
--- a/dependencies.yaml
+++ b/dependencies.yaml
@@ -9,7 +9,7 @@ files:
       - common_build
       - cpp_run
       - cudatoolkit
-      - doc
+      - docs
       - py_build
       - py_run
       - py_version
@@ -28,6 +28,12 @@ files:
     includes:
       - checks
       - py_version
+  docs:
+    output: none
+    includes:
+      - cudatoolkit
+      - docs
+      - py_version
   test_cpp:
     output: none
     includes:
@@ -176,7 +182,7 @@ dependencies:
               - *libcusolver114
               - *libcusparse_dev114
               - *libcusparse114
-  doc:
+  docs:
     common:
       - output_types: [conda, requirements]
         packages:
@@ -186,7 +192,7 @@ dependencies:
           - numpydoc
           - pydata-sphinx-theme
           - recommonmark
-          - sklearn
+          - scikit-learn=0.24
           - sphinx
           - sphinx-copybutton
           - sphinx-markdown-tables

From 2bfbf1525de3a338623ee17cdeed2b90a19c306c Mon Sep 17 00:00:00 2001
From: Ajay Thorve <ajaythorve1994@gmail.com>
Date: Tue, 24 Jan 2023 11:16:16 -0800
Subject: [PATCH 04/15] add docs-build GH commands

---
 .github/workflows/build.yaml | 11 +++++++++++
 .github/workflows/pr.yaml    | 10 ++++++++++
 2 files changed, 21 insertions(+)

diff --git a/.github/workflows/build.yaml b/.github/workflows/build.yaml
index 0225cac8a3..5e1de091c8 100644
--- a/.github/workflows/build.yaml
+++ b/.github/workflows/build.yaml
@@ -34,6 +34,17 @@ jobs:
       branch: ${{ inputs.branch }}
       date: ${{ inputs.date }}
       sha: ${{ inputs.sha }}
+  docs-build:
+    if: ${{ startsWith(github.ref, 'refs/heads/branch-') }}
+    needs: [python-build]
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/custom-job.yaml@cuda-118
+    with:
+      build_type: branch
+      node_type: "gpu-latest-1"
+      arch: "amd64"
+      container_image: "rapidsai/ci:latest"
+      run_script: "ci/build_docs.sh"
   python-build:
     needs: [cpp-build]
     secrets: inherit
diff --git a/.github/workflows/pr.yaml b/.github/workflows/pr.yaml
index 742e7dc07a..e8e145e6ea 100644
--- a/.github/workflows/pr.yaml
+++ b/.github/workflows/pr.yaml
@@ -68,6 +68,16 @@ jobs:
       arch: "amd64"
       container_image: "rapidsai/ci:latest"
       run_script: "ci/test_notebooks.sh"
+  docs-build:
+    needs: conda-python-build
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/custom-job.yaml@cuda-118
+    with:
+      build_type: pull-request
+      node_type: "gpu-latest-1"
+      arch: "amd64"
+      container_image: "rapidsai/ci:latest"
+      run_script: "ci/build_docs.sh"
   wheel-build-cuml:
     needs: checks
     secrets: inherit

From d01cebad436fd56654b0dbe0cf1f903b45914082 Mon Sep 17 00:00:00 2001
From: Ajay Thorve <ajaythorve1994@gmail.com>
Date: Tue, 24 Jan 2023 11:21:26 -0800
Subject: [PATCH 05/15] add build_docs script

---
 ci/build_docs.sh | 46 ++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 46 insertions(+)
 create mode 100755 ci/build_docs.sh

diff --git a/ci/build_docs.sh b/ci/build_docs.sh
new file mode 100755
index 0000000000..682c7ccc98
--- /dev/null
+++ b/ci/build_docs.sh
@@ -0,0 +1,46 @@
+#!/bin/bash
+set -euo pipefail
+
+rapids-logger "Create test conda environment"
+. /opt/conda/etc/profile.d/conda.sh
+
+rapids-dependency-file-generator \
+  --output conda \
+  --file_key docs \
+  --matrix "cuda=${RAPIDS_CUDA_VERSION%.*};arch=$(arch);py=${RAPIDS_PY_VERSION}" | tee env.yaml
+
+rapids-mamba-retry env create --force -f env.yaml -n docs
+conda activate docs
+
+rapids-print-env
+
+rapids-logger "Downloading artifacts from previous jobs"
+
+CPP_CHANNEL=$(rapids-download-conda-from-s3 cpp)
+PYTHON_CHANNEL=$(rapids-download-conda-from-s3 python)
+VERSION_NUMBER=$(rapids-get-rapids-version-from-git)
+
+rapids-mamba-retry install \
+  --channel "${CPP_CHANNEL}" \
+  --channel "${PYTHON_CHANNEL}" \
+  cuml libcuml
+
+# # Build CPP docs
+rapids-logger "Build cpp docs"
+pushd cpp
+doxygen Doxyfile.in
+popd
+
+# Build Python docs
+rapids-logger "Build Python docs"
+pushd docs
+sphinx-build -b dirhtml ./source _html
+sphinx-build -b text ./source _text
+popd
+
+if [[ "${RAPIDS_BUILD_TYPE}" == "branch" ]]; then
+  rapids-logger "Upload Docs to S3"
+  aws s3 sync --no-progress --delete cpp/html "s3://rapidsai-docs/libcuml/${VERSION_NUMBER}/html"
+  aws s3 sync --no-progress --delete python/docs/_html "s3://rapidsai-docs/cuml/${VERSION_NUMBER}/html"
+  aws s3 sync --no-progress --delete python/docs/_text "s3://rapidsai-docs/cuml/${VERSION_NUMBER}/txt"
+fi

From 25ea5372fbd6ec6552ed7029513a22a9a74f0f36 Mon Sep 17 00:00:00 2001
From: Ajay Thorve <ajaythorve1994@gmail.com>
Date: Tue, 24 Jan 2023 14:05:30 -0800
Subject: [PATCH 06/15] fix versions

---
 ci/build_docs.sh                                 | 4 ++--
 conda/environments/all_cuda-115_arch-x86_64.yaml | 2 +-
 dependencies.yaml                                | 2 +-
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/ci/build_docs.sh b/ci/build_docs.sh
index 682c7ccc98..64787d3b08 100755
--- a/ci/build_docs.sh
+++ b/ci/build_docs.sh
@@ -41,6 +41,6 @@ popd
 if [[ "${RAPIDS_BUILD_TYPE}" == "branch" ]]; then
   rapids-logger "Upload Docs to S3"
   aws s3 sync --no-progress --delete cpp/html "s3://rapidsai-docs/libcuml/${VERSION_NUMBER}/html"
-  aws s3 sync --no-progress --delete python/docs/_html "s3://rapidsai-docs/cuml/${VERSION_NUMBER}/html"
-  aws s3 sync --no-progress --delete python/docs/_text "s3://rapidsai-docs/cuml/${VERSION_NUMBER}/txt"
+  aws s3 sync --no-progress --delete docs/_html "s3://rapidsai-docs/cuml/${VERSION_NUMBER}/html"
+  aws s3 sync --no-progress --delete docs/_text "s3://rapidsai-docs/cuml/${VERSION_NUMBER}/txt"
 fi
diff --git a/conda/environments/all_cuda-115_arch-x86_64.yaml b/conda/environments/all_cuda-115_arch-x86_64.yaml
index 5932f70679..a89497a60e 100644
--- a/conda/environments/all_cuda-115_arch-x86_64.yaml
+++ b/conda/environments/all_cuda-115_arch-x86_64.yaml
@@ -62,9 +62,9 @@ dependencies:
 - scikit-learn=0.24
 - seaborn
 - sparse
-- sphinx
 - sphinx-copybutton
 - sphinx-markdown-tables
+- sphinx<6
 - statsmodels
 - sysroot_linux-64==2.17
 - treelite=3.0.1
diff --git a/dependencies.yaml b/dependencies.yaml
index eb9e3f67e7..f26a32c56d 100644
--- a/dependencies.yaml
+++ b/dependencies.yaml
@@ -193,7 +193,7 @@ dependencies:
           - pydata-sphinx-theme
           - recommonmark
           - scikit-learn=0.24
-          - sphinx
+          - sphinx<6
           - sphinx-copybutton
           - sphinx-markdown-tables
       - output_types: conda

From c252d42ab9edab4b2d00faaa257fde3dce2f57a2 Mon Sep 17 00:00:00 2001
From: Ajay Thorve <ajaythorve1994@gmail.com>
Date: Tue, 24 Jan 2023 14:20:33 -0800
Subject: [PATCH 07/15] add docs-build to pr-builder

---
 .github/workflows/pr.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/pr.yaml b/.github/workflows/pr.yaml
index e8e145e6ea..21d1ab2c7e 100644
--- a/.github/workflows/pr.yaml
+++ b/.github/workflows/pr.yaml
@@ -19,6 +19,7 @@ jobs:
       - conda-python-tests-singlegpu
       - conda-python-tests-dask
       - conda-notebook-tests
+      - docs-build
       - wheel-build-cuml
       - wheel-tests-cuml
     secrets: inherit

From 5e08c56deb99249fcb1990e7d6d9a165f936c19e Mon Sep 17 00:00:00 2001
From: Ajay Thorve <ajaythorve1994@gmail.com>
Date: Tue, 24 Jan 2023 17:10:40 -0800
Subject: [PATCH 08/15] add missing graphviz dependency

---
 conda/environments/all_cuda-115_arch-x86_64.yaml | 1 +
 dependencies.yaml                                | 1 +
 2 files changed, 2 insertions(+)

diff --git a/conda/environments/all_cuda-115_arch-x86_64.yaml b/conda/environments/all_cuda-115_arch-x86_64.yaml
index a89497a60e..7cc1134328 100644
--- a/conda/environments/all_cuda-115_arch-x86_64.yaml
+++ b/conda/environments/all_cuda-115_arch-x86_64.yaml
@@ -23,6 +23,7 @@ dependencies:
 - doxygen=1.8.20
 - faiss-proc=*=cuda
 - gcc_linux-64=9.*
+- graphviz
 - hdbscan
 - hypothesis>=6.0,<7
 - ipykernel
diff --git a/dependencies.yaml b/dependencies.yaml
index f26a32c56d..aaf9361521 100644
--- a/dependencies.yaml
+++ b/dependencies.yaml
@@ -186,6 +186,7 @@ dependencies:
     common:
       - output_types: [conda, requirements]
         packages:
+          - graphviz
           - ipython
           - ipykernel
           - nbsphinx

From 1a13368b688b343d7a8f34ad1c5a0fe59024fc12 Mon Sep 17 00:00:00 2001
From: Ajay Thorve <ajaythorve1994@gmail.com>
Date: Tue, 24 Jan 2023 17:38:05 -0800
Subject: [PATCH 09/15] fix conf.py for pydocs build

---
 docs/source/conf.py | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/docs/source/conf.py b/docs/source/conf.py
index 710402bd95..eaae92dec3 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -24,7 +24,6 @@
 # is relative to the documentation root, use os.path.abspath to make it
 # absolute, like shown here.
 sys.path.insert(0, os.path.abspath('sphinxext'))
-sys.path.insert(0, os.path.abspath('../../python'))
 
 from github_link import make_linkcode_resolve # noqa
 
@@ -179,8 +178,8 @@
 
 # Example configuration for intersphinx: refer to the Python standard library.
 intersphinx_mapping = {
-    "python": ('https://docs.python.org/', None),
-    "scipy": ('https://docs.scipy.org/doc/scipy/reference', None)
+    "python": ("https://docs.python.org/3", None),
+    "scipy": ("https://docs.scipy.org/doc/scipy", None),
 }
 
 # Config numpydoc

From f03f176781ef8a36de7647cbaf5cf6ec4932fc77 Mon Sep 17 00:00:00 2001
From: Ajay Thorve <ajaythorve1994@gmail.com>
Date: Tue, 24 Jan 2023 17:38:22 -0800
Subject: [PATCH 10/15] add -W flag to pydocs build

---
 ci/build_docs.sh | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/ci/build_docs.sh b/ci/build_docs.sh
index 64787d3b08..c56b4b7134 100755
--- a/ci/build_docs.sh
+++ b/ci/build_docs.sh
@@ -34,8 +34,8 @@ popd
 # Build Python docs
 rapids-logger "Build Python docs"
 pushd docs
-sphinx-build -b dirhtml ./source _html
-sphinx-build -b text ./source _text
+sphinx-build -b dirhtml ./source _html -W
+sphinx-build -b text ./source _text -W
 popd
 
 if [[ "${RAPIDS_BUILD_TYPE}" == "branch" ]]; then

From 86ec41cc5e31d759cbcf68d164bc8fdada755555 Mon Sep 17 00:00:00 2001
From: Ajay Thorve <AjayThorve@users.noreply.github.com>
Date: Wed, 25 Jan 2023 13:58:39 -0800
Subject: [PATCH 11/15] turn WARN_AS_ERROR back on

Co-authored-by: AJ Schmidt <ajschmidt8@users.noreply.github.com>
---
 cpp/Doxyfile.in | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/cpp/Doxyfile.in b/cpp/Doxyfile.in
index 09fbac37c0..7b61086873 100644
--- a/cpp/Doxyfile.in
+++ b/cpp/Doxyfile.in
@@ -737,7 +737,7 @@ WARN_NO_PARAMDOC       = YES
 # a warning is encountered.
 # The default value is: NO.
 
-WARN_AS_ERROR          = NO
+WARN_AS_ERROR          = YES
 
 # The WARN_FORMAT tag determines the format of the warning messages that doxygen
 # can produce. The string should contain the $file, $line, and $text tags, which

From 9e9f170535444570f187f41d95dd1b573665bddd Mon Sep 17 00:00:00 2001
From: Ajay Thorve <ajaythorve1994@gmail.com>
Date: Wed, 25 Jan 2023 14:08:28 -0800
Subject: [PATCH 12/15] add core_dists documentation to avoid docs warning

---
 cpp/include/cuml/cluster/hdbscan.hpp | 1 +
 1 file changed, 1 insertion(+)

diff --git a/cpp/include/cuml/cluster/hdbscan.hpp b/cpp/include/cuml/cluster/hdbscan.hpp
index 3df1b6887c..caf4132784 100644
--- a/cpp/include/cuml/cluster/hdbscan.hpp
+++ b/cpp/include/cuml/cluster/hdbscan.hpp
@@ -419,6 +419,7 @@ void generate_prediction_data(const raft::handle_t& handle,
  * @param metric distance metric to use
  * @param params struct of configuration hyper-parameters
  * @param out struct of output data and arrays on device
+ * @param core_dists array (size m, 1) of core distances
  */
 void hdbscan(const raft::handle_t& handle,
              const float* X,

From a31f1849b621cffa272cc94b481e1ee522a4729c Mon Sep 17 00:00:00 2001
From: AJ Schmidt <aschmidt@nvidia.com>
Date: Wed, 25 Jan 2023 17:28:20 -0500
Subject: [PATCH 13/15] update `sed` command & associated file path

---
 ci/release/update-version.sh | 2 +-
 cpp/Doxyfile.in              | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/ci/release/update-version.sh b/ci/release/update-version.sh
index 3768cc0012..0ad0771ff2 100755
--- a/ci/release/update-version.sh
+++ b/ci/release/update-version.sh
@@ -42,7 +42,7 @@ sed_runner 's/version = .*/version = '"'${NEXT_SHORT_TAG}'"'/g' docs/source/conf
 sed_runner 's/release = .*/release = '"'${NEXT_FULL_TAG}'"'/g' docs/source/conf.py
 
 # Update project_number (RAPIDS_VERSION) in the CPP doxygen file
-sed_runner 's/PROJECT_NUMBER         = .*/PROJECT_NUMBER         = '"'${NEXT_SHORT_TAG}'"'/g' Doxyfile.in
+sed_runner "s/\(PROJECT_NUMBER.*=\).*/\1 \"${NEXT_SHORT_TAG}\"/g" cpp/Doxyfile.in
 
 for FILE in dependencies.yaml conda/environments/*.yaml; do
    sed_runner "s/cudf=${CURRENT_SHORT_TAG}/cudf=${NEXT_SHORT_TAG}/g" ${FILE};
diff --git a/cpp/Doxyfile.in b/cpp/Doxyfile.in
index 7b61086873..a6827639a0 100644
--- a/cpp/Doxyfile.in
+++ b/cpp/Doxyfile.in
@@ -38,7 +38,7 @@ PROJECT_NAME           = "cuML C++ API"
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = '23.02'
+PROJECT_NUMBER         = "23.02"
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a

From 5a396fda583c0af15bf580afe8df106fb8fbce39 Mon Sep 17 00:00:00 2001
From: AJ Schmidt <aschmidt@nvidia.com>
Date: Wed, 25 Jan 2023 17:29:43 -0500
Subject: [PATCH 14/15] fix unrelated sed command

---
 ci/release/update-version.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ci/release/update-version.sh b/ci/release/update-version.sh
index 0ad0771ff2..2a71708a0c 100755
--- a/ci/release/update-version.sh
+++ b/ci/release/update-version.sh
@@ -60,7 +60,7 @@ for FILE in dependencies.yaml conda/environments/*.yaml; do
    sed_runner "s/rapids-doc-env=${CURRENT_SHORT_TAG}/rapids-doc-env=${NEXT_SHORT_TAG}/g" ${FILE};
 done
 
-sed_runner "s|/branch-.*/|/branch-${NEXT_SHORT_TAG}/|g" python/README.md
+sed_runner "s|/branch-.*?/|/branch-${NEXT_SHORT_TAG}/|g" python/README.md
 
 # Wheel builds clone cumlprims_mg, update its branch
 sed_runner "s/extra-repo-sha: branch-.*/extra-repo-sha: branch-${NEXT_SHORT_TAG}/g" .github/workflows/*.yaml

From 65de9b4e7d01817f604023b774eb186d072accf7 Mon Sep 17 00:00:00 2001
From: AJ Schmidt <aschmidt@nvidia.com>
Date: Thu, 26 Jan 2023 16:54:55 -0500
Subject: [PATCH 15/15] fix scikit-learn pinnings

---
 dependencies.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dependencies.yaml b/dependencies.yaml
index 8c190bc5d3..ebc2e49729 100644
--- a/dependencies.yaml
+++ b/dependencies.yaml
@@ -193,7 +193,7 @@ dependencies:
           - numpydoc
           - pydata-sphinx-theme
           - recommonmark
-          - scikit-learn=0.24
+          - &scikit_learn scikit-learn=1.2
           - sphinx<6
           - sphinx-copybutton
           - sphinx-markdown-tables
@@ -229,7 +229,7 @@ dependencies:
           - pytest-cases
           - pytest-cov
           - pytest-xdist
-          - &scikit_learn scikit-learn=1.2
+          - *scikit_learn
           - seaborn
           - sparse
           - statsmodels