diff --git a/.github/workflows/build_linux_aarch64.yml b/.github/workflows/build_linux_aarch64.yml index 29bafd2..d68e3b3 100644 --- a/.github/workflows/build_linux_aarch64.yml +++ b/.github/workflows/build_linux_aarch64.yml @@ -28,7 +28,7 @@ jobs: --volume "${PWD}:/muscle" install: | apt-get update -q -y - apt-get install -q -y make g++ file git python3 + apt-get install -q -y make g++ file git python3 curl run: | git config --global --add safe.directory /muscle cd /muscle/src diff --git a/README.md b/README.md index add0066..32c8ea6 100644 --- a/README.md +++ b/README.md @@ -11,9 +11,15 @@ Muscle supports generating an ensemble of alternative alignments with the same h Structure alignment ("Muscle-3D") is supported as well as conventional amino acid sequence alignment. Input for structure alignment is a "mega" file generated by the `pdb2mega` command of `reseek` (https://github.com/rcedgar/reseek).
+# for up to ~100 structures reseek -pdb2mega STRUCTS -output structs.mega -muscle -align structs.mega -output structs.afa # for up to ~100 structures -muscle -super7 structs.mega -output structs.afa # for up to ~10,000 structures +muscle -align structs.mega -output structs.afa + +# for up to ~10,000 structures +reseek -convert STRUCTS -bca structs.bca +reseek -pdb2mega structs.bca -output structs.mega +reseek -distmx structs.bca -output structs.distmx +muscle -super7 structs.mega -distmxin structs.distmx -reseek -output structs.afa### Downloads and installation