diff --git a/workflows/process/artic.nf b/workflows/process/artic.nf index cba69a5..d34aa00 100755 --- a/workflows/process/artic.nf +++ b/workflows/process/artic.nf @@ -78,7 +78,7 @@ process artic_medaka_custom_bed { input: tuple val(name), path(reads), path(external_scheme), path(primerBed) - val(normalize_threshold) + val(normalise_threshold) output: tuple val(name), path("*.consensus.fasta"), emit: fasta tuple val(name), path("${name}_mapped_*.primertrimmed.sorted.bam"), path("${name}_mapped_*.primertrimmed.sorted.bam.bai"), emit: reference_bam