From ed75ee4ad09ae81935a28cabca1265514199cb02 Mon Sep 17 00:00:00 2001
From: Christian Brandt <35726766+replikation@users.noreply.github.com>
Date: Thu, 29 Oct 2020 17:29:06 +0100
Subject: [PATCH] include log10 y axis for coverage plot

---
 bin/coverage_plot.R | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/bin/coverage_plot.R b/bin/coverage_plot.R
index dbb207a..d73d28a 100755
--- a/bin/coverage_plot.R
+++ b/bin/coverage_plot.R
@@ -16,7 +16,10 @@ plot <- ggplot(input) +
         theme_classic() +
         labs(title=as.vector(input$V1[[1]]), 
         x="Genome position",
-        y="Coverage")
+        y="Coverage") +
+        scale_y_continuous(trans = log10_trans(),
+          breaks = trans_breaks("log10", function(x) 10^x),
+          labels = trans_format("log10", math_format(10^.x)))
 
 
 svg("overview.svg", height = 3, width = 12)