I'm often lost when it comes to editing my own .fasta files, so I wanted to leave some useful scripts here.
I'll be updating this repository and commenting whenever I find something useful.
Please do keep in mind that my coding abilities aren't that impressive, so I may be using some scripts found on the Internet and editing them here.
Consider this more of a draft of a desperate bioinformatician.
Decided to put my PAML script here so that I can keep coming if my new versions are fucked up. This one is supposed to run PAML on multiple pairs of genes and trees. This is based on the branch-node model.
I was tasked with creating a pseudochromosome. Decided to do it with Python, and a simple script. This just adds N characters in the contig separations, but it also reformats it to have a nice .fasta file. Nothing special, but probably needed.