.gitignore

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData
.RDataTmp

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron

# pkgdown site
docs/

# translation temp files
po/*~

# RStudio Connect folder
rsconnect/

# Mac OS Files
.DS_Store

# files not needed in review 
do not commit/

# Adding folders to ignore - commented these out so they remain in GitHub for now, but these are the files to exclude during publishing
 data/Archive/
 data/BSLE_Data_Package_v3
 data/summary_leachate_conc.csv
 data/summary_NMR_spike.csv
 data/summary_solids_conc.csv
 data/summary_solids_nmr.csv
 data/solids_nmrEE.csv
 data/summary_stoich.csv
 figures/Archive
 figures/leach.Pnorm.conc.mbd.pdf
 figures/leachPnorm.conc.pdf
 figures/pH_BS.pdf
 figures/aq_pH.pdf
 figures/LCF72.pdf
 figures/LCF11.pdf
 figures/LCF14.pdf
 figures/LCF50.pdf
 figures/LCF2.pdf
 figures/LCF7.pdf
 figures/LCF13.pdf
 figures/XANES_stacked_spectra_rc.pdf
 figures/SB.mod.xanes.pdf
 figures/SB.low.xanes.pdf
 figures/SB.raw.xanes.pdf
 figures/DF.high.xanes.pdf
 figures/DF.mod.xanes.pdf
 figures/DF.low.xanes.pdf
 figures/DF.raw.xanes.pdf
 figures/xanes.legend.pdf
 figures/XANES_stacked_spectra_sb.pdf
 figures/XANES_stacked_spectra_df.pdf
 figures/mono_die_loss.pdf
 figures/SB.mod.nmr.pdf
 figures/SB.low.nmr.pdf
 figures/SB.raw.nmr.pdf
 figures/DF.high.nmr.pdf
 figures/DF.mod.nmr.pdf
 figures/DF.low.nmr.pdf
 figures/DF.raw.nmr.pdf
 figures/nmr.legend.pdf
 figures/NMR_stacked_spectra_sb.pdf
 figures/NMR_stacked_spectra_df.pdf
 figures/solid.P.BS.fig.pdf
 figures/leach.Pnorm.conc.mbd2.pdf
 figures/Char_Photos_Figure.pdf
 figures/Char_Photos_Figure.pptx
 figures/XANES_LCF_individual_sample_table
 figures/XANES_LCF_individual_sample_table
 figures/pH_fig.pdf
 figures/pH_fig.pptx
 figures/Path_Analysis_Conceptual_Model.pdf
 figures/Path_Analysis_Conceptual_Model.pptx
 figures/Path_Analysis.pdf
 figures/Path_Analysis.pptx
 figures/XANES_Spectra_Pie.pdf
 figures/XANES_Spectra_Pie.pptx
 figures/NMR_Spectra_Pie.pdf
 figures/NMR_Spectra_Pie.pptx
 figures/LCF_Eample_Samples_Tall.pdf
 figures/LCF_Eample_Samples_Tall.pptx
 figures/NMR_Methods.pdf
 figures/NMR_Methods.pptx
 figures/NMR_spiking.pdf
 figures/NMR_spiking.pptx
 figures/NMR_regions.pdf
 figures/NMR_regions.pptx
 figures/NMR region example sample.pdf
 figures/spike example figure_solid 11.pdf
 figures/spike example figure_solid 11.mnova
 figures/LCF_Example_Samples.pptx
 figures/Graphical_Abstract_final.pptx
 figures/Graphical_Abstract_final.pdf
 figures/leach.Pnorm.conc copy.pdf
 figures/Leachate_P_Conc.pdf
 figures/Leachate_P_Conc.pptx
 figures/Solid_P_Conc.pdf
 figures/Solid_P_Conc.pptx
 figures/conceptual_model.pdf
 figures/conceptual_model.pptx
 figures/Graphical_Abstract.pdf
 figures/Graphical_Abstract.pptx
 figures/burn_conditions_pca.pdf
 figures/Mono_Di_Percent_Loss.pdf
 figures/Mono_Di_perc_loss_fig.pdf
 figures/Mono_Di_Percent_Loss.png
 figures/XANES_RefCompd_Table_SubsetforLCF.xlsx
 figures/SEM3.pdf
 figures/Stoichiometry_table.xlsx
 figures/LCF_Example_Samples.pdf
 figures/each.charnorm.conc.pdf
 figures/p_pa.pdf
 figures/SEM1.pdf
 figures/p_pa2.pdf
 figures/corr_element_char_sage.pdf
 figures/corr_element_char_doug.pdf
 figures/corr_element_char_allecosystem.pdf
 figures/solid.element.corr.all.pdf
 figures/leach.conc.pdf
 figures/Leachate_stacked_bar.pdf
 figures/Leachate.unfilt.total.P.BS.boxplot.pdf
 figures/Leachate.filt0.7.total.P.BS.boxplot.pdf
 figures/Leachate.total.P.BS.boxplot.pdf
 figures/MBD.BS.fig.pdf
 figures/Solid_Conc_Table.xlsx
 figures/leachate_conc.pptx
 scripts/Archive
 data/.DS_Store
 figures/.DS_Store
 figures/Final_Figures_for_Publication/.DS_Store